{ "type": "genome", "identifier": "GCF_010993745.1", "organism": "Fodinicola acaciae", "title": "Fodinicola acaciae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010993745.1", "bioproject": "PRJNA224116", "biosample": "SAMN13425622", "wgs_master": "WOTN00000000.1", "refseq_category": "reference genome", "taxid": "2681555", "species_taxid": "2681555", "organism_name": "Fodinicola acaciae", "infraspecific_name": "strain=GKU 173", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/24", "asm_name": "ASM1099374v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_010993745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/993/745/GCF_010993745.1_ASM1099374v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8860993", "genome_size_ungapped": "8860993", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010993745.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "8453", "protein_coding_gene_count": "8311", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-24", "dateModified": "2020-02-24", "datePublished": "2020-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Fodinicola acaciae" ], "sample_taxid": [ "2681555" ], "sample_host_organism": [ "Acacia mangium" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Kasetsart University, Bangkok" ], "sample_host_location_id": [], "data_size": "2.397 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 6.94, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8860993", "Number of Sequences": "4", "Longest Sequences (bp)": "3221680", "N50 (bp)": "2350191", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "8547", "Average Protein Length": "311.3", "Coding Ratio (%)": "90.1", "Number of rRNAs": "6", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fodinicola acaciae", "strain": "strain=GKU 173", "accession": "GCA_010993745.1", "taxid": 2681555, "species_taxid": 2681555, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2951, "total_fragments": 2952, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 76.7205, "matched_fragments": 589, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis granulosa", "strain": "strain=DSM 45669", "accession": "GCA_011758745.1", "taxid": 185684, "species_taxid": 185684, "relation_to_type": "type", "validated": true, "ani": 76.7036, "matched_fragments": 520, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus litoris", "strain": "strain=GP-S2-8", "accession": "GCA_003075095.1", "taxid": 2171622, "species_taxid": 2171622, "relation_to_type": "type", "validated": true, "ani": 76.6851, "matched_fragments": 442, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 76.6159, "matched_fragments": 549, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus siccatus", "strain": "strain=DSM 45419", "accession": "GCA_900103785.1", "taxid": 1137991, "species_taxid": 1137991, "relation_to_type": "type", "validated": true, "ani": 76.6012, "matched_fragments": 507, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 76.5987, "matched_fragments": 609, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora fenicalii", "strain": "strain=CNT-569", "accession": "GCA_000514815.1", "taxid": 1137263, "species_taxid": 1137263, "relation_to_type": "type", "validated": true, "ani": 76.5929, "matched_fragments": 320, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kutzneria kofuensis", "strain": "strain=DSM 43851", "accession": "GCA_014203355.1", "taxid": 103725, "species_taxid": 103725, "relation_to_type": "type", "validated": true, "ani": 76.5843, "matched_fragments": 764, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermoflava", "strain": "strain=N1165", "accession": "GCA_000473265.1", "taxid": 84480, "species_taxid": 84480, "relation_to_type": "type", "validated": true, "ani": 76.5691, "matched_fragments": 653, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora cianjurensis", "strain": "strain=DSM 45657", "accession": "GCA_003663795.1", "taxid": 585224, "species_taxid": 585224, "relation_to_type": "type", "validated": true, "ani": 76.5598, "matched_fragments": 482, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 76.5577, "matched_fragments": 690, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix algeriensis", "strain": "strain=DSM 44581", "accession": "GCA_016907655.1", "taxid": 173560, "species_taxid": 173560, "relation_to_type": "type", "validated": true, "ani": 76.5449, "matched_fragments": 598, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastococcus aggregatus", "strain": "strain=DSM 4725", "accession": "GCA_900221005.1", "taxid": 38502, "species_taxid": 38502, "relation_to_type": "type", "validated": true, "ani": 76.5402, "matched_fragments": 440, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryptosporangium arvum", "strain": "strain=DSM 44712", "accession": "GCA_000585375.1", "taxid": 80871, "species_taxid": 80871, "relation_to_type": "type", "validated": true, "ani": 76.5322, "matched_fragments": 697, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix australiensis", "strain": "strain=DSM 43800", "accession": "GCA_003634935.1", "taxid": 2072, "species_taxid": 2072, "relation_to_type": "type", "validated": true, "ani": 76.5137, "matched_fragments": 609, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 76.5115, "matched_fragments": 715, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryptosporangium aurantiacum", "strain": "strain=DSM 46144", "accession": "GCA_900143005.1", "taxid": 134849, "species_taxid": 134849, "relation_to_type": "type", "validated": true, "ani": 76.4968, "matched_fragments": 667, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix ecbatanensis", "strain": "strain=DSM 45486", "accession": "GCA_014205015.1", "taxid": 1105145, "species_taxid": 1105145, "relation_to_type": "type", "validated": true, "ani": 76.4643, "matched_fragments": 553, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryptosporangium phraense", "strain": "strain=A-T 5661", "accession": "GCA_006912135.1", "taxid": 2593070, "species_taxid": 2593070, "relation_to_type": "type", "validated": true, "ani": 76.4494, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora citrea", "strain": "strain=NBRC 14495", "accession": "GCA_016862615.1", "taxid": 53366, "species_taxid": 53366, "relation_to_type": "type", "validated": true, "ani": 76.3277, "matched_fragments": 675, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 76.3274, "matched_fragments": 507, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 76.2193, "matched_fragments": 664, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 76.1237, "matched_fragments": 701, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 76.1011, "matched_fragments": 712, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomycetospora corticicola", "strain": "strain=DSM 45772", "accession": "GCA_013409505.1", "taxid": 663602, "species_taxid": 663602, "relation_to_type": "type", "validated": true, "ani": 75.9687, "matched_fragments": 452, "total_fragments": 2952, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 6.94, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010993745.1", "gtdb_species": "s__Fodinicola acaciae", "ani": 100.0, "matched_fragments": 2951, "total_fragments": 2952, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__HKI-0501;g__Fodinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_010993775.1", "gtdb_species": "s__Fodinicola feengrottensis", "ani": 80.3826, "matched_fragments": 1416, "total_fragments": 2952, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__HKI-0501;g__Fodinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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"total_fragments": 2952, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205015.1", "gtdb_species": "s__Actinosynnema ecbatanense", "ani": 76.5041, "matched_fragments": 553, "total_fragments": 2952, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinosynnema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900143005.1", "gtdb_species": "s__Cryptosporangium aurantiacum", "ani": 76.5009, "matched_fragments": 663, "total_fragments": 2952, 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