{ "type": "genome", "identifier": "GCF_010993775.1", "organism": "Fodinicola feengrottensis", "title": "Fodinicola feengrottensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010993775.1", "bioproject": "PRJNA224116", "biosample": "SAMN13425623", "wgs_master": "WOTO00000000.1", "refseq_category": "na", "taxid": "435914", "species_taxid": "435914", "organism_name": "Fodinicola feengrottensis", "infraspecific_name": "strain=HKI 0501", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/24", "asm_name": "ASM1099377v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_010993775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/993/775/GCF_010993775.1_ASM1099377v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8711677", "genome_size_ungapped": "8711677", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "107", "contig_count": "107", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010993775.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "11221", "protein_coding_gene_count": "9329", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-24", "dateModified": "2020-02-24", "datePublished": "2020-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Fodinicola feengrottensis" ], "sample_taxid": [ "435914" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Thuringia" ], "sample_host_location_id": [], "data_size": "2.408 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8711677", "Number of Sequences": "107", "Longest Sequences (bp)": "264677", "N50 (bp)": "115486", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "10821", "Average Protein Length": "219.3", "Coding Ratio (%)": "81.7", "Number of rRNAs": "6", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fodinicola acaciae", "strain": "strain=GKU 173", "accession": "GCA_010993745.1", "taxid": 2681555, "species_taxid": 2681555, "relation_to_type": "type", "validated": true, "ani": 80.4811, "matched_fragments": 1386, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=CP153-2", "accession": "GCA_003226595.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 76.6078, "matched_fragments": 318, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis granulosa", "strain": "strain=DSM 45669", "accession": "GCA_011758745.1", "taxid": 185684, "species_taxid": 185684, "relation_to_type": "type", "validated": true, "ani": 76.5983, "matched_fragments": 382, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora coriariae", "strain": "strain=DSM 44875", "accession": "GCA_900091455.1", "taxid": 285665, "species_taxid": 285665, "relation_to_type": "type", "validated": true, "ani": 76.5745, "matched_fragments": 454, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora nigra", "strain": "strain=DSM 43818", "accession": "GCA_900091585.1", "taxid": 145857, "species_taxid": 145857, "relation_to_type": "type", "validated": true, "ani": 76.5201, "matched_fragments": 380, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=NRRL B-24793", "accession": "GCA_001507315.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 76.4909, "matched_fragments": 407, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=AB-18-032", "accession": "GCA_000204155.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 76.4679, "matched_fragments": 407, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kutzneria kofuensis", "strain": "strain=DSM 43851", "accession": "GCA_014203355.1", "taxid": 103725, "species_taxid": 103725, "relation_to_type": "type", "validated": true, "ani": 76.4491, "matched_fragments": 579, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kutzneria buriramensis", "strain": "strain=DSM 45791", "accession": "GCA_003387475.1", "taxid": 1045776, "species_taxid": 1045776, "relation_to_type": "type", "validated": true, "ani": 76.3891, "matched_fragments": 599, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", "accession": "GCA_900090265.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 76.3845, "matched_fragments": 457, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter marinus", "strain": "strain=DSM 45201", "accession": "GCA_011758655.1", "taxid": 477641, "species_taxid": 477641, "relation_to_type": "type", "validated": true, "ani": 76.3811, "matched_fragments": 401, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter versicolor", "strain": "strain=DSM 16678", "accession": "GCA_014195485.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 76.3693, "matched_fragments": 403, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=AM105", "accession": "GCA_001542325.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 76.3297, "matched_fragments": 429, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 76.3167, "matched_fragments": 471, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 76.3065, "matched_fragments": 256, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter excelsi", "strain": "strain=1G6", "accession": "GCA_005930495.1", "taxid": 2213161, "species_taxid": 2213161, "relation_to_type": "type", "validated": true, "ani": 76.2777, "matched_fragments": 379, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis endophytica", "strain": "strain=DSM 104006", "accession": "GCA_013410405.1", "taxid": 860233, "species_taxid": 860233, "relation_to_type": "type", "validated": true, "ani": 76.2674, "matched_fragments": 409, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryptosporangium phraense", "strain": "strain=A-T 5661", "accession": "GCA_006912135.1", "taxid": 2593070, "species_taxid": 2593070, "relation_to_type": "type", "validated": true, "ani": 76.2452, "matched_fragments": 492, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=DSM 44179", "accession": "GCA_002101995.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 76.2198, "matched_fragments": 258, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora matsumotoense", "strain": "strain=DSM 44100", "accession": "GCA_900091525.1", "taxid": 121616, "species_taxid": 121616, "relation_to_type": "type", "validated": true, "ani": 76.2187, "matched_fragments": 467, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 76.2132, "matched_fragments": 341, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella isguenensis", "strain": "strain=CECT 8577", "accession": "GCA_014191605.1", "taxid": 1470180, "species_taxid": 1470180, "relation_to_type": "type", "validated": true, "ani": 76.2084, "matched_fragments": 240, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 76.194, "matched_fragments": 562, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 76.1651, "matched_fragments": 375, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryptosporangium arvum", "strain": "strain=DSM 44712", "accession": "GCA_000585375.1", "taxid": 80871, "species_taxid": 80871, "relation_to_type": "type", "validated": true, "ani": 76.1599, "matched_fragments": 568, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flexivirga oryzae", "strain": "strain=DSM 105369", "accession": "GCA_014190805.1", "taxid": 1794944, "species_taxid": 1794944, "relation_to_type": "type", "validated": true, "ani": 76.0658, "matched_fragments": 218, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia acaciae", "strain": "strain=DSM 45401", "accession": "GCA_000620785.1", "taxid": 551276, "species_taxid": 551276, "relation_to_type": "type", "validated": true, "ani": 76.0097, "matched_fragments": 557, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora citrea", "strain": "strain=NBRC 14495", "accession": "GCA_016862615.1", "taxid": 53366, "species_taxid": 53366, "relation_to_type": "type", "validated": true, "ani": 75.9966, "matched_fragments": 512, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes tereljensis", "strain": "strain=NBRC 105297", "accession": "GCA_016862435.1", "taxid": 571912, "species_taxid": 571912, "relation_to_type": "type", "validated": true, "ani": 75.9273, "matched_fragments": 550, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antricoccus suffuscus", "strain": "strain=DSM 100065", "accession": "GCA_003003235.1", "taxid": 1629062, "species_taxid": 1629062, "relation_to_type": "type", "validated": true, "ani": 75.8929, "matched_fragments": 134, "total_fragments": 2850, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_010993775.1", "gtdb_species": "s__Fodinicola feengrottensis", "ani": 100.0, "matched_fragments": 2841, "total_fragments": 2850, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__HKI-0501;g__Fodinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_010993745.1", "gtdb_species": "s__Fodinicola acaciae", "ani": 80.4189, "matched_fragments": 1393, "total_fragments": 2850, 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