{ "type": "genome", "identifier": "GCF_010994165.1", "organism": "Pseudomonas nitritireducens", "title": "Pseudomonas nitritireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_010994165.1", "bioproject": "PRJNA224116", "biosample": "SAMN13268851", "wgs_master": "WMBX00000000.1", "refseq_category": "reference genome", "taxid": "915472", "species_taxid": "915472", "organism_name": "Pseudomonas nitritireducens", "infraspecific_name": "strain=WZBFD3-5A2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/24", "asm_name": "ASM1099416v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_010994165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/010/994/165/GCF_010994165.1_ASM1099416v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6397936", "genome_size_ungapped": "6397936", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_010994165.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5906", "protein_coding_gene_count": "5799", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-24", "dateModified": "2020-02-24", "datePublished": "2020-02-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas nitritireducens" ], "sample_taxid": [ "915472" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: CGMCC" ], "sample_host_location_id": [], "data_size": "1.759 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6397936", "Number of Sequences": "12", "Longest Sequences (bp)": "1669081", "N50 (bp)": "932199", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "5865", "Average Protein Length": "324.9", "Coding Ratio (%)": "89.4", "Number of rRNAs": "4", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas nitroreducens", "strain": "strain=DSM 14399", "accession": "GCA_012986245.1", "taxid": 46680, "species_taxid": 46680, 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"validated": true, "ani": 86.6016, "matched_fragments": 1510, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=RLD-1", "accession": "GCA_900187975.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 86.595, "matched_fragments": 1490, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=LMG 18378", "accession": "GCA_900112375.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 86.5805, "matched_fragments": 1513, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=CCM 7361", "accession": "GCA_900099945.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 86.528, "matched_fragments": 1490, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas knackmussii", "strain": "strain=B13", "accession": "GCA_000689415.1", "taxid": 65741, "species_taxid": 65741, "relation_to_type": "type", "validated": true, "ani": 85.999, "matched_fragments": 1413, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=JCM 21621", "accession": "GCA_900103845.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 85.5691, "matched_fragments": 1247, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 83.713, "matched_fragments": 1244, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 83.6674, "matched_fragments": 1261, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 82.3357, "matched_fragments": 1004, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.3053, "matched_fragments": 910, "total_fragments": 2125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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2125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002452115.1", "gtdb_species": "s__Pseudomonas nitroreducens_B", "ani": 91.3145, "matched_fragments": 1487, "total_fragments": 2125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204515.1", "gtdb_species": "s__Pseudomonas nitritireducens_A", "ani": 91.2146, "matched_fragments": 1768, "total_fragments": 2125, "gtdb_taxonomy": 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