{ "type": "genome", "identifier": "GCF_011008855.1", "organism": "Bacillus aquiflavi", "title": "Bacillus aquiflavi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China Center of Industrial Culture Collection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011008855.1", "bioproject": "PRJNA224116", "biosample": "SAMN14089840", "wgs_master": "JAAIWN000000000.1", "refseq_category": "na", "taxid": "2672567", "species_taxid": "2672567", "organism_name": "Bacillus aquiflavi", "infraspecific_name": "strain=3H-10", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/25", "asm_name": "ASM1100885v1", "asm_submitter": "China Center of Industrial Culture Collection", "gbrs_paired_asm": "GCA_011008855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/008/855/GCF_011008855.1_ASM1100885v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3616560", "genome_size_ungapped": "3616560", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "120", "contig_count": "120", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011008855.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "3591", "protein_coding_gene_count": "3383", "non_coding_gene_count": "97", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-25", "dateModified": "2020-02-25", "datePublished": "2020-02-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus aquiflavi" ], "sample_taxid": [ "2672567" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.024 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3616560", "Number of Sequences": "120", "Longest Sequences (bp)": "210881", "N50 (bp)": "65076", "Gap Ratio (%)": "0.000028", "GCcontent (%)": "35.4", "Number of CDSs": "3465", "Average Protein Length": "278.4", "Coding Ratio (%)": "80.0", "Number of rRNAs": "7", "Number of tRNAs": "79", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus aquiflavi", "strain": "strain=3H-10", "accession": "GCA_011008855.1", "taxid": 2672567, "species_taxid": 2672567, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1139, "total_fragments": 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"strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 77.0382, "matched_fragments": 97, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_017809215.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 77.0209, "matched_fragments": 95, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus firmus", "strain": "strain=NBRC 15306", "accession": "GCA_001591465.1", "taxid": 1399, "species_taxid": 1399, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9983, "matched_fragments": 83, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus massilionigeriensis", "strain": "strain=Marseille-P2384", "accession": "GCA_900117315.1", "taxid": 1805475, "species_taxid": 1805475, "relation_to_type": "type", "validated": true, "ani": 76.9598, "matched_fragments": 129, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 76.9345, "matched_fragments": 101, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoneobacillus rhizosphaerae", "strain": "strain=CIP 111885", "accession": "GCA_917563885.1", "taxid": 2880968, "species_taxid": 2880968, "relation_to_type": "type", "validated": true, "ani": 76.8685, "matched_fragments": 107, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus benzoevorans", "strain": "strain=DSM 5391", "accession": "GCA_014207535.1", "taxid": 1456, 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true, "ani": 76.6536, "matched_fragments": 94, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus eiseniae", "strain": "strain=DSM 26675", "accession": "GCA_017874625.1", "taxid": 762947, "species_taxid": 762947, "relation_to_type": "type", "validated": true, "ani": 76.4912, "matched_fragments": 118, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus fastidiosus", "strain": "strain=NBRC 101226", "accession": "GCA_001591625.1", "taxid": 1458, "species_taxid": 1458, "relation_to_type": "type", "validated": true, "ani": 76.1182, "matched_fragments": 111, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011008855.1", "gtdb_species": "s__Bacillus_BT aquiflavi", "ani": 100.0, "matched_fragments": 1139, "total_fragments": 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