{
    "type": "genome",
    "identifier": "GCF_011009555.1",
    "organism": "Adonisia turfae CCMR0081",
    "title": "Adonisia turfae CCMR0081",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Federal University of Rio de Janeiro",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011009555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09765393",
        "wgs_master": "QXHD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2292702",
        "species_taxid": "2950184",
        "organism_name": "Adonisia turfae CCMR0081",
        "infraspecific_name": "strain=CCMR0081",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/25",
        "asm_name": "ASM1100955v1",
        "asm_submitter": "Federal University of Rio de Janeiro",
        "gbrs_paired_asm": "GCA_011009555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/009/555/GCF_011009555.1_ASM1100955v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8660379",
        "genome_size_ungapped": "8656239",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "17",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011009555.1-RS_2024_06_06",
        "annotation_date": "2024-06-06",
        "total_gene_count": "7478",
        "protein_coding_gene_count": "7184",
        "non_coding_gene_count": "81",
        "pubmed_id": "32060621"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-25",
    "dateModified": "2020-02-25",
    "datePublished": "2020-02-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Adonisia turfae CCMR0081"
        ],
        "sample_taxid": [
            "2292702"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Abrolhos reef system"
        ],
        "sample_host_location_id": [],
        "data_size": "2.475 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8660379",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "7693661",
        "N50 (bp)": "7693661",
        "Gap Ratio (%)": "0.047804",
        "GCcontent (%)": "47.3",
        "Number of CDSs": "7242",
        "Average Protein Length": "329.1",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "9",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "15"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Adonisia turfae",
                "strain": "strain=CCMR0081",
                "accession": "GCA_011009555.1",
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                "species_taxid": 2950184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2877,
                "total_fragments": 2878,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halomicronema hongdechloris",
                "strain": "strain=C2206",
                "accession": "GCA_002075285.3",
                "taxid": 1209493,
                "species_taxid": 1209493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3223,
                "matched_fragments": 82,
                "total_fragments": 2878,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_011009555.1",
                "gtdb_species": "s__Leptothoe sp011009555",
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                "matched_fragments": 2877,
                "total_fragments": 2878,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Leptothoe",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000316115.1",
                "gtdb_species": "s__Leptothoe sp000316115",
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                "matched_fragments": 2284,
                "total_fragments": 2878,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Leptothoe",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000482245.1",
                "gtdb_species": "s__Leptothoe sp000482245",
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                "matched_fragments": 1324,
                "total_fragments": 2878,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Leptothoe",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018739885.1",
                "gtdb_species": "s__Leptothoe spongobia",
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                "matched_fragments": 715,
                "total_fragments": 2878,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Leptothoe",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015207065.1",
                "gtdb_species": "s__Leptothoe ectocarpi",
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                "total_fragments": 2878,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Leptothoe",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010671905.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018739865.1",
                "gtdb_species": "s__Leptothoe kymatousa",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012911975.1",
                "gtdb_species": "s__Nodosilinea sp003564835",
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                "matched_fragments": 73,
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Nodosilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014697375.1",
                "gtdb_species": "s__Nodosilinea sp014697375",
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                "matched_fragments": 83,
                "total_fragments": 2878,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Nodosilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Adonisia",
        "turfae",
        "CCMR0081"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}