{ "type": "genome", "identifier": "GCF_011038645.2", "organism": "Corynebacterium qintianiae", "title": "Corynebacterium qintianiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011038645.2", "bioproject": "PRJNA224116", "biosample": "SAMN14086271", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2709392", "species_taxid": "2709392", "organism_name": "Corynebacterium qintianiae", "infraspecific_name": "strain=MC1420", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/04", "asm_name": "ASM1103864v2", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_011038645.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/038/645/GCF_011038645.2_ASM1103864v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2218231", "genome_size_ungapped": "2218231", "gc_percent": "64.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011038645.2-RS_2024_05_21", "annotation_date": "2024-05-21", "total_gene_count": "2167", "protein_coding_gene_count": "2075", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-04", "dateModified": "2020-12-04", "datePublished": "2020-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium qintianiae" ], "sample_taxid": [ "2709392" ], "sample_host_organism": [ "blue sheep" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.619 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2218231", "Number of Sequences": "2", "Longest Sequences (bp)": "2202436", "N50 (bp)": "2202436", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.6", "Number of CDSs": "2147", "Average Protein Length": "317.0", "Coding Ratio (%)": "92.1", "Number of rRNAs": "12", "Number of tRNAs": "54", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium qintianiae", "strain": "strain=MC1420", "accession": "GCA_011038645.2", "taxid": 2709392, "species_taxid": 2709392, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bouchesdurhonense", "strain": "strain=SN14", "accession": "GCA_900078305.2", "taxid": 1720192, "species_taxid": 1720192, "relation_to_type": "type", "validated": true, "ani": 80.0874, "matched_fragments": 377, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lujinxingii", "strain": "strain=zg-917", "accession": "GCA_014267325.1", "taxid": 2763010, "species_taxid": 2763010, "relation_to_type": "type", "validated": true, "ani": 79.9931, "matched_fragments": 359, "total_fragments": 739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=LMG 29598", "accession": "GCA_007559235.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 79.9575, "matched_fragments": 370, "total_fragments": 739, "ani_threshold": 95, "status": 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