{ "type": "genome", "identifier": "GCF_011038745.1", "organism": "Neisseria yangbaofengii", "title": "Neisseria yangbaofengii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011038745.1", "bioproject": "PRJNA224116", "biosample": "SAMN14086975", "wgs_master": "JAAKDR000000000.1", "refseq_category": "na", "taxid": "2709396", "species_taxid": "2709396", "organism_name": "Neisseria yangbaofengii", "infraspecific_name": "strain=ZJ785", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/28", "asm_name": "ASM1103874v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_011038745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/038/745/GCF_011038745.1_ASM1103874v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2565231", "genome_size_ungapped": "2565231", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011038745.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "2592", "protein_coding_gene_count": "2443", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-28", "dateModified": "2020-02-28", "datePublished": "2020-02-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria yangbaofengii" ], "sample_taxid": [ "2709396" ], "sample_host_organism": [ "Marmot" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.720 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2565231", "Number of Sequences": "79", "Longest Sequences (bp)": "142305", "N50 (bp)": "71559", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.6", "Number of CDSs": "2386", "Average Protein Length": "291.7", "Coding Ratio (%)": "81.4", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria iguanae", "strain": "strain=ATCC 51483", "accession": "GCA_003013245.1", "taxid": 90242, "species_taxid": 90242, "relation_to_type": "type", "validated": true, "ani": 85.096, "matched_fragments": 572, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bergeriella denitrificans", "strain": "strain=NCTC10295", "accession": "GCA_900453875.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 80.2291, "matched_fragments": 444, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bergeriella denitrificans", "strain": "strain=NBRC 102155", "accession": "GCA_001592185.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 80.2162, "matched_fragments": 362, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria animalis", "strain": "strain=ATCC 49930", "accession": "GCA_008806995.1", "taxid": 492, "species_taxid": 492, "relation_to_type": "type", "validated": true, "ani": 80.1251, "matched_fragments": 410, 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"organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_000813705.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 79.5861, "matched_fragments": 372, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria subflava", "strain": "strain=ATCC 49275", "accession": "GCA_005221305.1", "taxid": 28449, "species_taxid": 28449, "relation_to_type": "type", "validated": true, "ani": 79.5461, "matched_fragments": 389, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 79.5443, "matched_fragments": 392, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=DSM 17713", "accession": "GCA_014054945.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5165, "matched_fragments": 414, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=ATCC 29256", "accession": "GCA_000174655.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4394, "matched_fragments": 412, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 79.4208, "matched_fragments": 318, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2918, "matched_fragments": 389, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_002108595.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 78.8258, "matched_fragments": 392, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=LMG 30012", "accession": "GCA_022870885.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 78.7944, "matched_fragments": 353, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella testudinis", "strain": "strain=CCUG 63373m", "accession": "GCA_022870865.1", "taxid": 1282863, "species_taxid": 1282863, "relation_to_type": "type", "validated": true, "ani": 78.637, "matched_fragments": 418, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014898075.1", "gtdb_species": "s__Neisseria sp011038745", "ani": 99.9982, "matched_fragments": 816, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_009671065.1", "gtdb_species": "s__Neisseria brasiliensis", "ani": 89.4021, "matched_fragments": 673, "total_fragments": 816, "gtdb_taxonomy": 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