{ "type": "genome", "identifier": "GCF_011044155.1", "organism": "Pikeienuella piscinae", "title": "Pikeienuella piscinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Pukyong National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011044155.1", "bioproject": "PRJNA224116", "biosample": "SAMN14132394", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2748098", "species_taxid": "2748098", "organism_name": "Pikeienuella piscinae", "infraspecific_name": "strain=RR4-56", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/01", "asm_name": "ASM1104415v1", "asm_submitter": "Pukyong National University", "gbrs_paired_asm": "GCA_011044155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/044/155/GCF_011044155.1_ASM1104415v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4373045", "genome_size_ungapped": "4373045", "gc_percent": "66.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011044155.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4186", "protein_coding_gene_count": "4066", "non_coding_gene_count": "51", "pubmed_id": "33877579" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-01", "dateModified": "2020-03-01", "datePublished": "2020-03-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pikeienuella piscinae" ], "sample_taxid": [ "2748098" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Busan" ], "sample_host_location_id": [], "data_size": "1.193 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4373045", "Number of Sequences": "1", "Longest Sequences (bp)": "4373045", "N50 (bp)": "4373045", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "4160", "Average Protein Length": "317.4", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pikeienuella piscinae", "strain": "strain=RR4-56", "accession": "GCA_011044155.1", "taxid": 2748098, "species_taxid": 2748098, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1455, "total_fragments": 1457, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 77.5024, "matched_fragments": 385, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aminovorans", "strain": "strain=DSM 8537", "accession": "GCA_900113565.1", "taxid": 34004, "species_taxid": 34004, "relation_to_type": "type", "validated": true, "ani": 77.2315, "matched_fragments": 235, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paroceanicella profunda", "strain": "strain=D4M1", "accession": "GCA_005887635.2", "taxid": 2579971, "species_taxid": 2579971, "relation_to_type": "type", "validated": true, "ani": 77.1342, "matched_fragments": 353, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontivivens ytuae", "strain": "strain=MT2928", "accession": "GCA_015679265.1", "taxid": 2789856, "species_taxid": 2789856, "relation_to_type": "type", "validated": true, "ani": 77.1214, "matched_fragments": 279, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax lentus", "strain": "strain=DSM 29430", "accession": "GCA_900156805.1", "taxid": 633194, "species_taxid": 633194, "relation_to_type": "type", "validated": true, "ani": 77.0667, "matched_fragments": 288, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lutimaris", "strain": "strain=CECT 8525", "accession": "GCA_003337565.1", "taxid": 1490030, "species_taxid": 1490030, "relation_to_type": "type", "validated": true, "ani": 77.0543, "matched_fragments": 200, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Meinhardsimonia xiamenensis", "strain": "strain=DSM 24422", "accession": "GCA_003001835.1", "taxid": 990712, "species_taxid": 990712, "relation_to_type": "type", "validated": true, "ani": 77.0274, "matched_fragments": 245, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Meinhardsimonia xiamenensis", "strain": "strain=CGMCC 1.10789", "accession": "GCA_900102905.1", "taxid": 990712, "species_taxid": 990712, "relation_to_type": "type", "validated": true, "ani": 77.0225, "matched_fragments": 244, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas pacifica", "strain": "strain=CGMCC 1.11030", "accession": "GCA_900113695.1", "taxid": 1114924, "species_taxid": 1114924, "relation_to_type": "type", "validated": true, "ani": 76.9341, "matched_fragments": 401, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 76.9267, "matched_fragments": 269, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas donghaensis", "strain": "strain=DSM 17890", "accession": "GCA_900106695.1", "taxid": 356660, "species_taxid": 356660, "relation_to_type": "type", "validated": true, "ani": 76.9232, "matched_fragments": 401, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 76.8778, "matched_fragments": 375, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dinoroseobacter shibae", "strain": "strain=DFL 12", "accession": "GCA_000018145.1", "taxid": 215813, "species_taxid": 215813, "relation_to_type": "type", "validated": true, "ani": 76.8672, "matched_fragments": 227, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 76.8584, "matched_fragments": 267, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 76.8327, "matched_fragments": 362, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrimonas cliftonensis", "strain": "strain=DSM 15345", "accession": "GCA_900107585.1", "taxid": 89524, "species_taxid": 89524, "relation_to_type": "type", "validated": true, "ani": 76.7987, "matched_fragments": 397, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 76.7984, "matched_fragments": 213, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=DSM 29507", "accession": "GCA_003634925.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 76.7802, "matched_fragments": 215, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 76.0099, "matched_fragments": 215, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas horti", "strain": "strain=MAH-20", "accession": "GCA_009753715.1", "taxid": 2682842, "species_taxid": 2682842, "relation_to_type": "type", "validated": true, "ani": 75.9954, "matched_fragments": 141, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 75.9742, "matched_fragments": 156, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 75.9344, "matched_fragments": 216, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 75.6187, "matched_fragments": 194, "total_fragments": 1457, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011044155.1", "gtdb_species": "s__Pikeienuella piscinae", "ani": 100.0, "matched_fragments": 1455, "total_fragments": 1457, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pikeienuella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_011620265.1", "gtdb_species": "s__Albidovulum sp011620265", "ani": 77.5195, "matched_fragments": 309, 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