{
    "type": "genome",
    "identifier": "GCF_011044775.1",
    "organism": "Limisphaera ngatamarikiensis",
    "title": "Limisphaera ngatamarikiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Canterbury",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011044775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14102279",
        "wgs_master": "JAAKYA000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1324935",
        "species_taxid": "1324935",
        "organism_name": "Limisphaera ngatamarikiensis",
        "infraspecific_name": "strain=NGM72.4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/01",
        "asm_name": "ASM1104477v1",
        "asm_submitter": "University of Canterbury",
        "gbrs_paired_asm": "GCA_011044775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/044/775/GCF_011044775.1_ASM1104477v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3908748",
        "genome_size_ungapped": "3902350",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "96",
        "contig_count": "96",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011044775.1-RS_2024_05_06",
        "annotation_date": "2024-05-06",
        "total_gene_count": "2908",
        "protein_coding_gene_count": "2816",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-01",
    "dateModified": "2020-03-01",
    "datePublished": "2020-03-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Limisphaera ngatamarikiensis"
        ],
        "sample_taxid": [
            "1324935"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand"
        ],
        "sample_host_location_id": [],
        "data_size": "1.090 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
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            "max": 67.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3908748",
        "Number of Sequences": "96",
        "Longest Sequences (bp)": "362347",
        "N50 (bp)": "114780",
        "Gap Ratio (%)": "0.163684",
        "GCcontent (%)": "64.9",
        "Number of CDSs": "2869",
        "Average Protein Length": "373.9",
        "Coding Ratio (%)": "82.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "10"
    },
    "has_analysis": true,
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                "organism_name": "Limisphaera ngatamarikiensis",
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                "species_taxid": 1324935,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1258,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Archangium gephyra",
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                "accession": "GCA_003387095.1",
                "taxid": 48,
                "species_taxid": 48,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7785,
                "matched_fragments": 65,
                "total_fragments": 1260,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Embleya scabrispora",
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                "accession": "GCA_000372745.1",
                "taxid": 159449,
                "species_taxid": 159449,
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                "matched_fragments": 62,
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "mean_intra_species_ani": "N/A",
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    },
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    "quality": 4,
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}