{ "type": "genome", "identifier": "GCF_011045125.1", "organism": "Mesorhizobium camelthorni", "title": "Mesorhizobium camelthorni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Academy of Agriculture and Forestry Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011045125.1", "bioproject": "PRJNA224116", "biosample": "SAMN14167759", "wgs_master": "JAAKZF000000000.1", "refseq_category": "reference genome", "taxid": "475069", "species_taxid": "475069", "organism_name": "Mesorhizobium camelthorni", "infraspecific_name": "strain=CCNWXJ 40-4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/01", "asm_name": "ASM1104512v1", "asm_submitter": "Beijing Academy of Agriculture and Forestry Science", "gbrs_paired_asm": "GCA_011045125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/045/125/GCF_011045125.1_ASM1104512v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7298447", "genome_size_ungapped": "7298447", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "346", "contig_count": "346", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011045125.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "7334", "protein_coding_gene_count": "6885", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-01", "dateModified": "2020-03-01", "datePublished": "2020-03-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium camelthorni" ], "sample_taxid": [ "475069" ], "sample_host_organism": [ "Alhagi sparsifolia" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang" ], "sample_host_location_id": [], "data_size": "2.048 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7298447", "Number of Sequences": "346", "Longest Sequences (bp)": "464020", "N50 (bp)": "74213", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.4", "Number of CDSs": "7038", "Average Protein Length": "288.5", "Coding Ratio (%)": "83.5", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium camelthorni", "strain": "strain=CCNWXJ 40-4", "accession": "GCA_011045125.1", "taxid": 475069, "species_taxid": 475069, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2265, "total_fragments": 2279, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mesorhizobium alhagi", "strain": "strain=CCNWXJ12-2", "accession": "GCA_000236565.2", "taxid": 475067, "species_taxid": 475067, "relation_to_type": "type", "validated": true, "ani": 91.3138, "matched_fragments": 1464, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium zhangyense", "strain": "strain=CGMCC 1.15528", "accession": "GCA_011045115.1", "taxid": 1776730, "species_taxid": 1776730, "relation_to_type": "type", "validated": true, "ani": 81.2676, "matched_fragments": 976, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium muleiense", "strain": "strain=CGMCC 1.11022", "accession": "GCA_900099905.1", "taxid": 1004279, "species_taxid": 1004279, "relation_to_type": "type", "validated": true, "ani": 81.2243, "matched_fragments": 1004, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 81.2068, "matched_fragments": 1044, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium caraganae", "strain": "strain=LMG 24397", "accession": "GCA_016836705.1", "taxid": 483206, "species_taxid": 483206, "relation_to_type": "type", "validated": true, "ani": 81.1404, "matched_fragments": 1004, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium tamadayense", "strain": "strain=DSM 28320", "accession": "GCA_003863365.1", "taxid": 425306, "species_taxid": 425306, "relation_to_type": "type", "validated": true, "ani": 80.9865, "matched_fragments": 1026, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium wenxiniae", "strain": "strain=WYCCWR 10195", "accession": "GCA_002284535.1", "taxid": 2014805, "species_taxid": 2014805, "relation_to_type": "type", "validated": true, "ani": 80.9082, "matched_fragments": 985, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium albiziae", "strain": "strain=DSM 21822", "accession": "GCA_900114255.1", "taxid": 335020, "species_taxid": 335020, "relation_to_type": "type", "validated": true, "ani": 80.8342, "matched_fragments": 982, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium norvegicum", "strain": "strain=10.2.2", "accession": "GCA_004919685.1", "taxid": 1085774, "species_taxid": 1085774, "relation_to_type": "type", "validated": true, "ani": 80.8011, "matched_fragments": 1004, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, "relation_to_type": "type", "validated": true, "ani": 80.7701, "matched_fragments": 985, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 80.6472, "matched_fragments": 1015, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 80.5357, "matched_fragments": 894, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 80.3775, "matched_fragments": 789, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aminovorans", "strain": "strain=NCTC10684", "accession": "GCA_900445235.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 80.3434, "matched_fragments": 808, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aminovorans", "strain": "strain=DSM 7048", "accession": "GCA_004341645.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 80.3307, "matched_fragments": 793, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 79.5856, "matched_fragments": 768, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 79.2595, "matched_fragments": 705, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=19-2017", "accession": "GCA_018310375.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 79.2517, "matched_fragments": 705, "total_fragments": 2279, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011045125.1", "gtdb_species": "s__Pseudaminobacter camelthorni", "ani": 100.0, "matched_fragments": 2265, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000236565.1", "gtdb_species": "s__Pseudaminobacter alhagi", "ani": 91.308, "matched_fragments": 1464, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003590645.1", "gtdb_species": "s__Pseudaminobacter sp900116595", "ani": 81.279, "matched_fragments": 922, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "97.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_011045115.1", "gtdb_species": "s__Pseudaminobacter zhangyensis", "ani": 81.2514, "matched_fragments": 978, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900099905.1", "gtdb_species": "s__Mesorhizobium muleiense", "ani": 81.2374, "matched_fragments": 1002, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.77", "min_intra_species_ani": "96.33", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.80", "num_clustered_genomes": 57, "status": "-" }, { "accession": "GCF_900156895.1", "gtdb_species": "s__Mesorhizobium prunaredense", "ani": 81.2337, "matched_fragments": 1019, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004791025.1", "gtdb_species": "s__Mesorhizobium sp004791025", "ani": 81.142, "matched_fragments": 1021, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_016836705.1", "gtdb_species": "s__Mesorhizobium caraganae", "ani": 81.1299, "matched_fragments": 1007, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "96.20", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017874015.1", "gtdb_species": "s__Pseudaminobacter sp017874015", "ani": 81.0153, "matched_fragments": 812, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004791585.1", "gtdb_species": "s__Mesorhizobium sp004791585", "ani": 80.9875, "matched_fragments": 969, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_003952485.1", "gtdb_species": "s__Mesorhizobium sp003952485", "ani": 80.9605, "matched_fragments": 1014, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_014189435.1", "gtdb_species": "s__Mesorhizobium loti_G", "ani": 80.9465, "matched_fragments": 1012, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004919685.1", "gtdb_species": "s__Mesorhizobium norvegicum", "ani": 80.8221, "matched_fragments": 1000, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900114255.1", "gtdb_species": "s__Mesorhizobium_F albiziae", "ani": 80.8188, "matched_fragments": 984, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007003975.1", "gtdb_species": "s__Mesorhizobium sp007003975", "ani": 80.6979, "matched_fragments": 972, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004801285.1", "gtdb_species": "s__Mesorhizobium composti", "ani": 80.3773, "matched_fragments": 788, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.99", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003577315.1", "gtdb_species": "s__Aquamicrobium_A sp003577315", "ani": 80.1031, "matched_fragments": 586, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016742175.1", "gtdb_species": "s__Aliihoeflea sp016742175", "ani": 79.7734, "matched_fragments": 627, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aliihoeflea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001014615.2", "gtdb_species": "s__Aquamicrobium_A sp001014615", "ani": 79.7652, "matched_fragments": 760, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001427385.1", "gtdb_species": "s__Mesorhizobium sp001427385", "ani": 79.4741, "matched_fragments": 657, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008180155.1", "gtdb_species": "s__Aquamicrobium_A microcysteis", "ani": 79.3623, "matched_fragments": 658, "total_fragments": 2279, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.394, "cell_length": 0.163, "doubling_h": 0.38, "growth_tmp": 30.0, "optimum_tmp": 28.233, "optimum_ph": 7.1, "genome_size": 6924855.425, "gc_content": 61.795, "coding_genes": 6455.004, "rRNA16S_genes": 2.0, "tRNA_genes": 52.916, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.923, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mesorhizobium", "camelthorni" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }