{ "type": "genome", "identifier": "GCF_011045165.1", "organism": "Arthrobacter silviterrae", "title": "Arthrobacter silviterrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Academy of Agriculture and Forestry Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011045165.1", "bioproject": "PRJNA224116", "biosample": "SAMN14167782", "wgs_master": "JAAKZI000000000.1", "refseq_category": "na", "taxid": "2026658", "species_taxid": "2026658", "organism_name": "Arthrobacter silviterrae", "infraspecific_name": "strain=DSM 27180", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/01", "asm_name": "ASM1104516v1", "asm_submitter": "Beijing Academy of Agriculture and Forestry Science", "gbrs_paired_asm": "GCA_011045165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/045/165/GCF_011045165.1_ASM1104516v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4287170", "genome_size_ungapped": "4287170", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "106", "contig_count": "106", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011045165.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3927", "protein_coding_gene_count": "3823", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-01", "dateModified": "2020-03-01", "datePublished": "2020-03-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter silviterrae" ], "sample_taxid": [ "2026658" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Ongjin County" ], "sample_host_location_id": [], "data_size": "1.193 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4287170", "Number of Sequences": "106", "Longest Sequences (bp)": "314230", "N50 (bp)": "101186", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.8", "Number of CDSs": "3888", "Average Protein Length": "324.7", "Coding Ratio (%)": "88.3", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter silviterrae", "strain": "strain=DSM 27180", "accession": "GCA_011045165.1", "taxid": 2026658, 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"total_fragments": 1382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cryoconiti", "strain": "strain=Cr6-08", "accession": "GCA_020905375.1", "taxid": 748907, "species_taxid": 748907, "relation_to_type": "type", "validated": true, "ani": 78.9481, "matched_fragments": 408, "total_fragments": 1382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 78.3251, "matched_fragments": 314, "total_fragments": 1382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 78.3235, "matched_fragments": 355, "total_fragments": 1382, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ulcerisalmonis", "strain": "", "accession": "GCA_900609065.1", "taxid": 2483813, "species_taxid": 2483813, "relation_to_type": "type", "validated": true, "ani": 78.2583, "matched_fragments": 332, "total_fragments": 1382, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011045165.1", "gtdb_species": "s__Specibacter silviterrae", "ani": 100.0, "matched_fragments": 1376, "total_fragments": 1382, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Specibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013376105.1", "gtdb_species": "s__Specibacter 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arthrobacter", "silviterrae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }