{ "type": "genome", "identifier": "GCF_011045195.1", "organism": "Caulobacter soli", "title": "Caulobacter soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Forestry University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011045195.1", "bioproject": "PRJNA224116", "biosample": "SAMN14056263", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2708539", "species_taxid": "2708539", "organism_name": "Caulobacter soli", "infraspecific_name": "strain=Ji-3-8", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/02", "asm_name": "ASM1104519v1", "asm_submitter": "Nanjing Forestry University", "gbrs_paired_asm": "GCA_011045195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/045/195/GCF_011045195.1_ASM1104519v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5677014", "genome_size_ungapped": "5676814", "gc_percent": "68.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011045195.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5300", "protein_coding_gene_count": "5202", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-02", "dateModified": "2020-03-02", "datePublished": "2020-03-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Caulobacter soli" ], "sample_taxid": [ "2708539" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.534 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5676814", "Number of Sequences": "2", "Longest Sequences (bp)": "5256297", "N50 (bp)": "5256297", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.1", "Number of CDSs": "5255", "Average Protein Length": "323.1", "Coding Ratio (%)": "89.7", "Number of rRNAs": "6", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caulobacter soli", "strain": "strain=Ji-3-8", "accession": "GCA_011045195.1", "taxid": 2708539, "species_taxid": 2708539, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1891, "total_fragments": 1892, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=CGMCC 1.15915", "accession": "GCA_014645055.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 88.9843, "matched_fragments": 1260, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=KCTC 52515", "accession": "GCA_010977555.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 88.9704, "matched_fragments": 1266, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter flavus", "strain": "strain=RHGG3", "accession": "GCA_003722335.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 84.6077, "matched_fragments": 1074, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter hibisci", "strain": "strain=KACC 18849", "accession": "GCA_016135805.1", "taxid": 2035993, "species_taxid": 2035993, "relation_to_type": "type", "validated": true, "ani": 84.601, "matched_fragments": 1095, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter flavus", "strain": "strain=CGMCC1 15093", "accession": "GCA_002858845.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 84.4312, "matched_fragments": 1076, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter radicis", "strain": "strain=695", "accession": "GCA_003094615.1", "taxid": 2172650, "species_taxid": 2172650, "relation_to_type": "type", "validated": true, "ani": 84.4204, "matched_fragments": 1084, "total_fragments": 1892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter zeae", "strain": "strain=410", "accession": 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