{ "type": "genome", "identifier": "GCF_011057645.1", "organism": "Marisediminicola senii", "title": "Marisediminicola senii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Centre for Cell Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011057645.1", "bioproject": "PRJNA224116", "biosample": "SAMN14143998", "wgs_master": "JAALGE000000000.1", "refseq_category": "reference genome", "taxid": "2711233", "species_taxid": "2711233", "organism_name": "Marisediminicola senii", "infraspecific_name": "strain=SM7_A14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/02", "asm_name": "ASM1105764v1", "asm_submitter": "National Centre for Cell Science", "gbrs_paired_asm": "GCA_011057645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/057/645/GCF_011057645.1_ASM1105764v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3236374", "genome_size_ungapped": "3236374", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "110", "contig_count": "110", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011057645.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3108", "protein_coding_gene_count": "3007", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-02", "dateModified": "2020-03-02", "datePublished": "2020-03-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Marisediminicola senii" ], "sample_taxid": [ "2711233" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Maitri station" ], "sample_host_location_id": [], "data_size": "0.886 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3236374", "Number of Sequences": "110", "Longest Sequences (bp)": "341138", "N50 (bp)": "52576", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.5", "Number of CDSs": "3005", "Average Protein Length": "318.9", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marisediminicola senii", "strain": "strain=SM7_A14", "accession": "GCA_011057645.1", "taxid": 2711233, "species_taxid": 2711233, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"below_threshold" }, { "organism_name": "Lacisediminihabitans profunda", "strain": "strain=CHu50b-6-2", "accession": "GCA_008040105.1", "taxid": 2594790, "species_taxid": 2594790, "relation_to_type": "type", "validated": true, "ani": 79.5817, "matched_fragments": 411, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=VKM Ac-1403", "accession": "GCA_900168345.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4426, "matched_fragments": 371, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter californiensis", "strain": "strain=CFBP 8216", "accession": "GCA_003576155.1", "taxid": 1401995, "species_taxid": 1401995, "relation_to_type": "type", "validated": true, "ani": 79.4421, "matched_fragments": 314, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. michiganensis", "strain": "strain=LMG 7333", "accession": "GCA_002240575.1", "taxid": 33013, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 79.4077, "matched_fragments": 373, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=LMG7333", "accession": "GCA_021216655.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3946, "matched_fragments": 381, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 79.1886, "matched_fragments": 415, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { 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"organism_name": "Clavibacter californiensis", "strain": "strain=CFBP 8216", "accession": "GCA_021952865.1", "taxid": 1401995, "species_taxid": 1401995, "relation_to_type": "type", "validated": true, "ani": 79.0131, "matched_fragments": 394, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux solani", "strain": "strain=NBRC 106740", "accession": "GCA_001571005.1", "taxid": 661329, "species_taxid": 661329, "relation_to_type": "type", "validated": true, "ani": 78.968, "matched_fragments": 414, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces agglutinans", "strain": "strain=CFH 90414", "accession": "GCA_009647605.1", "taxid": 2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 78.6958, "matched_fragments": 379, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium arcticum", "strain": "strain=SK-1", "accession": "GCA_003185895.1", "taxid": 670052, "species_taxid": 670052, "relation_to_type": "type", "validated": true, "ani": 78.6881, "matched_fragments": 384, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux moechotypicola", "strain": "strain=KCTC 19653", "accession": "GCA_024979255.1", "taxid": 637393, "species_taxid": 637393, "relation_to_type": "type", "validated": true, "ani": 78.6677, "matched_fragments": 399, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 78.655, "matched_fragments": 408, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mediolanus", "strain": "strain=JCM 3346", "accession": "GCA_014648575.1", "taxid": 41986, "species_taxid": 41986, "relation_to_type": "type", "validated": true, "ani": 78.5429, "matched_fragments": 357, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agreia bicolorata", "strain": "strain=VKM Ac-1804", "accession": "GCA_000938265.1", "taxid": 110935, "species_taxid": 110935, "relation_to_type": "type", "validated": true, "ani": 78.4425, "matched_fragments": 311, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Subtercola frigoramans", "strain": "strain=DSM 13057", "accession": "GCA_016907385.1", "taxid": 120298, "species_taxid": 120298, "relation_to_type": "type", "validated": true, "ani": 78.1092, "matched_fragments": 265, "total_fragments": 1023, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011057645.1", 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