{
    "type": "genome",
    "identifier": "GCF_011059185.1",
    "organism": "Rhodobacter kunshanensis",
    "title": "Rhodobacter kunshanensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Rhodobacter translucens HX-7-19",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011059185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14150085",
        "wgs_master": "JAALFE000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2583234",
        "species_taxid": "2583234",
        "organism_name": "Rhodobacter kunshanensis",
        "infraspecific_name": "strain=HX-7-19",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/03",
        "asm_name": "ASM1105918v1",
        "asm_submitter": "Rhodobacter translucens HX-7-19",
        "gbrs_paired_asm": "GCA_011059185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/059/185/GCF_011059185.1_ASM1105918v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4464082",
        "genome_size_ungapped": "4463324",
        "gc_percent": "66.000000",
        "replicon_count": "0",
        "scaffold_count": "117",
        "contig_count": "117",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011059185.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4432",
        "protein_coding_gene_count": "4330",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-03",
    "dateModified": "2020-03-03",
    "datePublished": "2020-03-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodobacter kunshanensis"
        ],
        "sample_taxid": [
            "2583234"
        ],
        "sample_host_organism": [
            "not collected"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Kunshan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.219 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4464082",
        "Number of Sequences": "117",
        "Longest Sequences (bp)": "465531",
        "N50 (bp)": "163542",
        "Gap Ratio (%)": "0.017002",
        "GCcontent (%)": "65.9",
        "Number of CDSs": "4329",
        "Average Protein Length": "307.6",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhodobacter ruber",
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                "species_taxid": 1985673,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            {
                "organism_name": "Rhodobacter amnigenus",
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                "accession": "GCA_019130055.1",
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                "species_taxid": 2852097,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            {
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Gemmobacter straminiformis",
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                "taxid": 2045119,
                "species_taxid": 2045119,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 798,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "species_taxid": 2595004,
                "relation_to_type": "type",
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                "ani": 80.6502,
                "matched_fragments": 677,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter aquatilis",
                "strain": "strain=DSM 3857",
                "accession": "GCA_900110025.1",
                "taxid": 933059,
                "species_taxid": 933059,
                "relation_to_type": "type",
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                "ani": 80.2191,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodobacter calidifons",
                "strain": "strain=M37P",
                "accession": "GCA_011174775.1",
                "taxid": 2715277,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Rhodobacter flagellatus",
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            },
            {
                "organism_name": "Gemmobacter fulva",
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                "accession": "GCA_018798885.1",
                "taxid": 2840474,
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                "matched_fragments": 644,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Gemmobacter lanyuensis",
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                "matched_fragments": 606,
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            {
                "organism_name": "Cereibacter ovatus",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Gemmobacter lutimaris",
                "strain": "strain=YJ-T1-11",
                "accession": "GCA_003570715.1",
                "taxid": 2306023,
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmobacter serpentinus",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus versutus",
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}