{ "type": "genome", "identifier": "GCF_011065485.1", "organism": "Rahnella contaminans", "title": "Rahnella contaminans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BioPS Co., Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011065485.1", "bioproject": "PRJNA224116", "biosample": "SAMN13909976", "wgs_master": "JAADJS000000000.1", "refseq_category": "reference genome", "taxid": "2703882", "species_taxid": "2703882", "organism_name": "Rahnella contaminans", "infraspecific_name": "strain=Lac-M11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/05", "asm_name": "ASM1106548v1", "asm_submitter": "BioPS Co., Ltd.", "gbrs_paired_asm": "GCA_011065485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/065/485/GCF_011065485.1_ASM1106548v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5230797", "genome_size_ungapped": "5230602", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011065485.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4755", "protein_coding_gene_count": "4628", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-05", "dateModified": "2020-03-05", "datePublished": "2020-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Rahnella contaminans" ], "sample_taxid": [ "2703882" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju" ], "sample_host_location_id": [], "data_size": "1.477 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5230797", "Number of Sequences": "15", "Longest Sequences (bp)": "2062847", "N50 (bp)": "1200290", "Gap Ratio (%)": "0.003728", "GCcontent (%)": "53.1", "Number of CDSs": "4694", "Average Protein Length": "325.9", "Coding Ratio (%)": "87.7", "Number of rRNAs": "5", "Number of tRNAs": "70", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rahnella contaminans", "strain": "strain=Lac-M11", "accession": "GCA_011065485.1", "taxid": 2703882, "species_taxid": 2703882, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1735, "total_fragments": 1736, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rahnella laticis", "strain": "strain=SAP-17", "accession": "GCA_015644585.1", "taxid": 2787622, "species_taxid": 2787622, "relation_to_type": "type", "validated": true, "ani": 95.2489, "matched_fragments": 1565, "total_fragments": 1736, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Rahnella variigena", "strain": "strain=CIP 105588", "accession": "GCA_003610915.1", "taxid": 574964, "species_taxid": 574964, "relation_to_type": "type", "validated": true, "ani": 86.972, "matched_fragments": 1369, "total_fragments": 1736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella variigena", "strain": "strain=CIP 105588", "accession": "GCA_003602185.1", "taxid": 574964, "species_taxid": 574964, "relation_to_type": "type", "validated": true, "ani": 86.9312, "matched_fragments": 1366, "total_fragments": 1736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella ecdela", "strain": "strain=FRB 231", "accession": "GCA_019049625.1", "taxid": 2816250, "species_taxid": 2816250, "relation_to_type": "type", "validated": true, "ani": 86.8861, "matched_fragments": 1376, "total_fragments": 1736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella bonaserana", "strain": "strain=H11b", "accession": "GCA_019049675.1", "taxid": 2816248, "species_taxid": 2816248, "relation_to_type": "type", "validated": true, "ani": 86.8745, "matched_fragments": 1384, "total_fragments": 1736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella victoriana", "strain": "strain=DSM 27397", "accession": "GCA_004330295.1", "taxid": 1510570, "species_taxid": 1510570, "relation_to_type": "type", "validated": true, "ani": 86.8344, "matched_fragments": 1377, "total_fragments": 1736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella woolbedingensis", "strain": "strain=DSM 27399", "accession": "GCA_003602095.1", "taxid": 1510574, "species_taxid": 1510574, "relation_to_type": "type", "validated": true, "ani": 86.8259, "matched_fragments": 1364, "total_fragments": 1736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella bruchi", "strain": "strain=DSM 27398", "accession": "GCA_003614975.1", "taxid": 1510573, "species_taxid": 1510573, "relation_to_type": "type", "validated": true, "ani": 86.7108, "matched_fragments": 1389, "total_fragments": 1736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella rivi", "strain": "strain=FC061912-K", "accession": "GCA_019049655.1", "taxid": 2816249, "species_taxid": 2816249, "relation_to_type": "type", "validated": true, "ani": 85.7215, "matched_fragments": 1314, "total_fragments": 1736, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella perminowiae", "strain": "strain=SL6", "accession": "GCA_019049755.1", "taxid": 2816244, "species_taxid": 2816244, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002834385.1", "gtdb_species": "s__Rahnella sp002834385", "ani": 90.4746, "matched_fragments": 1458, "total_fragments": 1736, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003610915.1", "gtdb_species": "s__Rahnella variigena", "ani": 86.9629, "matched_fragments": 1370, "total_fragments": 1736, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella", "ani_circumscription_radius": 95.0, 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