{ "type": "genome", "identifier": "GCF_011074795.1", "organism": "Marinobacter salicampi", "title": "Marinobacter salicampi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011074795.1", "bioproject": "PRJNA224116", "biosample": "SAMN14253721", "wgs_master": "JAAMPF000000000.1", "refseq_category": "reference genome", "taxid": "435907", "species_taxid": "435907", "organism_name": "Marinobacter salicampi", "infraspecific_name": "strain=ISL-40", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/09", "asm_name": "ASM1107479v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_011074795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/074/795/GCF_011074795.1_ASM1107479v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4345659", "genome_size_ungapped": "4345659", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011074795.1-RS_2024_04_10", "annotation_date": "2024-04-10", "total_gene_count": "3966", "protein_coding_gene_count": "3904", "non_coding_gene_count": "34", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-09", "dateModified": "2020-03-09", "datePublished": "2020-03-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter salicampi" ], "sample_taxid": [ "435907" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.238 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4345659", "Number of Sequences": "36", "Longest Sequences (bp)": "749645", "N50 (bp)": "218776", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.4", "Number of CDSs": "3993", "Average Protein Length": "322.5", "Coding Ratio (%)": "88.9", "Number of rRNAs": "2", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter salicampi", "strain": "strain=ISL-40", "accession": "GCA_011074795.1", "taxid": 435907, "species_taxid": 435907, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1429, "total_fragments": 1430, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter changyiensis", "strain": "strain=CLL7-20", "accession": "GCA_009193265.1", "taxid": 2604091, "species_taxid": 2604091, "relation_to_type": "type", "validated": true, "ani": 78.7674, "matched_fragments": 392, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter orientalis", "strain": "strain=W62", "accession": "GCA_004792665.1", "taxid": 1928859, "species_taxid": 1928859, "relation_to_type": "type", "validated": true, "ani": 78.6586, "matched_fragments": 344, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter orientalis", "strain": "strain=W62", "accession": "GCA_012956055.1", "taxid": 1928859, "species_taxid": 1928859, "relation_to_type": "type", "validated": true, "ani": 78.647, "matched_fragments": 357, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 78.6178, "matched_fragments": 359, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter alexandrii", "strain": "strain=LZ-8", "accession": "GCA_005871205.1", "taxid": 2570351, "species_taxid": 2570351, "relation_to_type": "type", "validated": true, "ani": 78.1797, "matched_fragments": 318, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter caseinilyticus", "strain": "strain=M3-13", "accession": "GCA_011074955.1", "taxid": 2692195, "species_taxid": 2692195, "relation_to_type": "type", "validated": true, "ani": 78.1488, "matched_fragments": 339, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter daqiaonensis", "strain": "strain=YCSA40", "accession": "GCA_012070355.1", "taxid": 650891, "species_taxid": 650891, "relation_to_type": "type", "validated": true, "ani": 78.1174, "matched_fragments": 304, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 78.0673, "matched_fragments": 349, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=KCTC 42705", "accession": "GCA_008795935.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 78.0558, "matched_fragments": 322, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=HJM-18", "accession": "GCA_004785685.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 78.0555, "matched_fragments": 326, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 77.9876, "matched_fragments": 271, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 77.962, "matched_fragments": 337, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fuscus", "strain": "strain=NH169-3", "accession": "GCA_003007675.1", "taxid": 2109942, "species_taxid": 2109942, "relation_to_type": "type", "validated": true, "ani": 77.9083, "matched_fragments": 255, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halotolerans", "strain": "strain=NBRC 110910", "accession": "GCA_008795985.1", "taxid": 1569211, "species_taxid": 1569211, "relation_to_type": "type", "validated": true, "ani": 77.9063, "matched_fragments": 327, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter zhanjiangensis", "strain": "strain=KCTC 22280", "accession": "GCA_014651935.1", "taxid": 578215, "species_taxid": 578215, "relation_to_type": "type", "validated": true, "ani": 77.8884, "matched_fragments": 335, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 77.8449, "matched_fragments": 334, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halodurans", "strain": "strain=YJ-S3-2", "accession": "GCA_004327985.1", "taxid": 2528979, "species_taxid": 2528979, "relation_to_type": "type", "validated": true, "ani": 77.8164, "matched_fragments": 328, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinexigens", "strain": "strain=ZYF650", "accession": "GCA_008370345.1", "taxid": 2919747, "species_taxid": 2919747, "relation_to_type": "type", "validated": true, "ani": 77.8047, "matched_fragments": 237, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mangrovi", "strain": "strain=CHFG3-1-5", "accession": "GCA_016798325.1", "taxid": 2803918, "species_taxid": 2803918, "relation_to_type": "type", "validated": true, "ani": 77.7646, "matched_fragments": 323, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011074795.1", "gtdb_species": "s__Marinobacter salicampi", "ani": 100.0, "matched_fragments": 1429, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009193265.1", "gtdb_species": "s__Marinobacter changyiensis", "ani": 78.7581, "matched_fragments": 393, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005298175.1", "gtdb_species": "s__Marinobacter sp005298175", "ani": 78.7123, "matched_fragments": 380, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004792665.1", "gtdb_species": "s__Marinobacter orientalis", "ani": 78.6617, "matched_fragments": 345, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", 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"N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018334495.1", "gtdb_species": "s__Marinobacter sp018334495", "ani": 78.3042, "matched_fragments": 299, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005871205.1", "gtdb_species": "s__Marinobacter alexandrii", "ani": 78.1921, "matched_fragments": 317, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.90", "min_intra_species_af": 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sp014762755", "ani": 77.4024, "matched_fragments": 250, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.602, "doubling_h": -0.125, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 7.5, "genome_size": 4220111.947, "gc_content": 56.678, "coding_genes": 3548.15, "rRNA16S_genes": 2.444, "tRNA_genes": 48.833, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "salicampi" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }