{ "type": "genome", "identifier": "GCF_011089875.1", "organism": "Psychroflexus maritimus", "title": "Psychroflexus maritimus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011089875.1", "bioproject": "PRJNA224116", "biosample": "SAMN14260173", "wgs_master": "JAANAS000000000.1", "refseq_category": "reference genome", "taxid": "2714865", "species_taxid": "2714865", "organism_name": "Psychroflexus maritimus", "infraspecific_name": "strain=C1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/09", "asm_name": "ASM1108987v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_011089875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/089/875/GCF_011089875.1_ASM1108987v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2592038", "genome_size_ungapped": "2591788", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "126", "contig_count": "126", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011089875.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2373", "protein_coding_gene_count": "2285", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-09", "dateModified": "2020-03-09", "datePublished": "2020-03-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Psychroflexus maritimus" ], "sample_taxid": [ "2714865" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Weihai" ], "sample_host_location_id": [], "data_size": "0.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2592038", "Number of Sequences": "126", "Longest Sequences (bp)": "262890", "N50 (bp)": "96791", "Gap Ratio (%)": "0.009645", "GCcontent (%)": "33.9", "Number of CDSs": "2214", "Average Protein Length": "334.5", "Coding Ratio (%)": "85.7", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Psychroflexus maritimus", "strain": "strain=C1", "accession": "GCA_011089875.1", "taxid": 2714865, "species_taxid": 2714865, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 826, "total_fragments": 829, "ani_threshold": 95, "status": 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"GCA_014764305.1", "taxid": 2708110, "species_taxid": 2708110, "relation_to_type": "type", "validated": true, "ani": 76.4775, "matched_fragments": 61, "total_fragments": 829, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 76.4414, "matched_fragments": 58, "total_fragments": 829, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 76.3823, "matched_fragments": 66, "total_fragments": 829, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia oceanica", "strain": "strain=ISS653", "accession": "GCA_902499555.1", "taxid": 2687242, "species_taxid": 2687242, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum flavum", "strain": "strain=A20", "accession": "GCA_016406085.1", "taxid": 2795986, "species_taxid": 2795986, "relation_to_type": "type", "validated": true, "ani": 76.0122, "matched_fragments": 58, "total_fragments": 829, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011089875.1", "gtdb_species": "s__Psychroflexus maritimus", "ani": 100.0, "matched_fragments": 826, "total_fragments": 829, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Psychroflexus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003564185.1", "gtdb_species": 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