{ "type": "genome", "identifier": "GCF_011089895.1", "organism": "Mucilaginibacter inviolabilis", "title": "Mucilaginibacter inviolabilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KIRBB", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011089895.1", "bioproject": "PRJNA224116", "biosample": "SAMN14260763", "wgs_master": "JAANAT000000000.1", "refseq_category": "reference genome", "taxid": "2714892", "species_taxid": "2714892", "organism_name": "Mucilaginibacter inviolabilis", "infraspecific_name": "strain=HC2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/09", "asm_name": "ASM1108989v1", "asm_submitter": "KIRBB", "gbrs_paired_asm": "GCA_011089895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/089/895/GCF_011089895.1_ASM1108989v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7148183", "genome_size_ungapped": "7148085", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011089895.1-RS_2024_08_04", "annotation_date": "2024-08-04", "total_gene_count": "6108", "protein_coding_gene_count": "6037", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-09", "dateModified": "2020-03-09", "datePublished": "2020-03-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter inviolabilis" ], "sample_taxid": [ "2714892" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "2.023 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7148183", "Number of Sequences": "13", "Longest Sequences (bp)": "3883027", "N50 (bp)": "3883027", "Gap Ratio (%)": "0.001371", "GCcontent (%)": "42.0", "Number of CDSs": "5966", "Average Protein Length": "345.2", "Coding Ratio (%)": "86.4", "Number of rRNAs": "5", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter inviolabilis", "strain": "strain=HC2", "accession": "GCA_011089895.1", "taxid": 2714892, "species_taxid": 2714892, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2376, "total_fragments": 2376, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 88.298, "matched_fragments": 1824, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ANJLi2", "accession": "GCA_014200545.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 88.2544, "matched_fragments": 1824, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 79.3781, "matched_fragments": 787, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorax", "strain": "strain=KHI28", "accession": "GCA_007971525.1", "taxid": 862126, "species_taxid": 862126, "relation_to_type": "type", "validated": true, "ani": 79.1898, "matched_fragments": 760, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypii", "strain": "strain=Gh-67", "accession": "GCA_900100945.1", "taxid": 551996, "species_taxid": 551996, "relation_to_type": "type", "validated": true, "ani": 78.5887, "matched_fragments": 741, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 78.5601, "matched_fragments": 740, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter rubeus", "strain": "strain=CGMCC 1.15913", "accession": "GCA_014643835.1", "taxid": 2027860, "species_taxid": 2027860, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5125, "matched_fragments": 721, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 78.4337, "matched_fragments": 685, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 77.8063, "matched_fragments": 462, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.7533, "matched_fragments": 355, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.3621, "matched_fragments": 279, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter robiniae", "strain": "strain=F39-2", "accession": "GCA_012849215.1", "taxid": 2728022, "species_taxid": 2728022, "relation_to_type": "type", "validated": true, "ani": 77.1687, "matched_fragments": 184, "total_fragments": 2376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter mongoliensis", "strain": "strain=KCTC 52859", "accession": "GCA_024436395.1", "taxid": 2100740, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900103125.1", "gtdb_species": "s__Mucilaginibacter sp900103125", "ani": 86.1697, "matched_fragments": 1690, "total_fragments": 2376, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013149275.1", "gtdb_species": "s__Mucilaginibacter sp013149275", "ani": 85.9919, "matched_fragments": 1670, "total_fragments": 2376, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mucilaginibacter", "inviolabilis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }