{ "type": "genome", "identifier": "GCF_011174775.1", "organism": "Rhodobacter calidifons", "title": "Rhodobacter calidifons", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bellevue University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011174775.1", "bioproject": "PRJNA224116", "biosample": "SAMN14291278", "wgs_master": "JAANHS000000000.1", "refseq_category": "reference genome", "taxid": "2715277", "species_taxid": "2715277", "organism_name": "Rhodobacter calidifons", "infraspecific_name": "strain=M37P", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/12", "asm_name": "ASM1117477v1", "asm_submitter": "Bellevue University", "gbrs_paired_asm": "GCA_011174775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/174/775/GCF_011174775.1_ASM1117477v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3626721", "genome_size_ungapped": "3626721", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011174775.1-RS_2024_07_25", "annotation_date": "2024-07-25", "total_gene_count": "3664", "protein_coding_gene_count": "3530", "non_coding_gene_count": "52", "pubmed_id": "35744687" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-12", "dateModified": "2020-03-12", "datePublished": "2020-03-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodobacter calidifons" ], "sample_taxid": [ "2715277" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Yellowstone National Park, Mushroom Hot Spring" ], "sample_host_location_id": [], "data_size": "0.990 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3626721", "Number of Sequences": "59", "Longest Sequences (bp)": "483911", "N50 (bp)": "255108", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.5", "Number of CDSs": "3614", "Average Protein Length": "302.2", "Coding Ratio (%)": "90.3", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodobacter calidifons", "strain": "strain=M37P", "accession": "GCA_011174775.1", "taxid": 2715277, "species_taxid": 2715277, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1179, 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"below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=DSM 18774", "accession": "GCA_003254335.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 80.1395, "matched_fragments": 631, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeruleus", "strain": "strain=N8", "accession": "GCA_008271655.1", "taxid": 2595004, "species_taxid": 2595004, "relation_to_type": "type", "validated": true, "ani": 79.8542, "matched_fragments": 569, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter ruber", "strain": "strain=CCP-1", "accession": "GCA_009908315.1", "taxid": 1985673, "species_taxid": 1985673, "relation_to_type": "type", "validated": true, "ani": 79.8533, "matched_fragments": 644, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter straminiformis", "strain": "strain=CAM-8", "accession": "GCA_014243445.1", "taxid": 2045119, "species_taxid": 2045119, "relation_to_type": "type", "validated": true, "ani": 79.6527, "matched_fragments": 617, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 79.6465, "matched_fragments": 538, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=DSM 21823", "accession": "GCA_003054195.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 79.2995, "matched_fragments": 577, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquaticus", "strain": "strain=CGMCC 1.7029", "accession": "GCA_014645295.1", "taxid": 490185, "species_taxid": 490185, "relation_to_type": "type", "validated": true, "ani": 79.0219, "matched_fragments": 463, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquaticus", "strain": "strain=A1-9", "accession": "GCA_007859075.1", "taxid": 490185, "species_taxid": 490185, "relation_to_type": "type", "validated": true, "ani": 78.9948, "matched_fragments": 465, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 78.8846, "matched_fragments": 578, "total_fragments": 1181, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, 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