{ "type": "genome", "identifier": "GCF_011299575.1", "organism": "Leucobacter viscericola", "title": "Leucobacter viscericola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011299575.1", "bioproject": "PRJNA224116", "biosample": "SAMN14260665", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2714935", "species_taxid": "2714935", "organism_name": "Leucobacter viscericola", "infraspecific_name": "strain=HDW9C", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1129957v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_011299575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/299/575/GCF_011299575.1_ASM1129957v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3697133", "genome_size_ungapped": "3697133", "gc_percent": "61.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011299575.1-RS_2024_04_23", "annotation_date": "2024-04-23", "total_gene_count": "3271", "protein_coding_gene_count": "3187", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter viscericola" ], "sample_taxid": [ "2714935" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.038 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3697133", "Number of Sequences": "1", "Longest Sequences (bp)": "3697133", "N50 (bp)": "3697133", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "3276", "Average Protein Length": "342.8", "Coding Ratio (%)": "91.1", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter viscericola", "strain": "strain=HDW9C", "accession": "GCA_011299575.1", "taxid": 2714935, "species_taxid": 2714935, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1231, "total_fragments": 1232, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leucobacter coleopterorum", "strain": "strain=HDW9A", "accession": "GCA_011382985.1", "taxid": 2714933, "species_taxid": 2714933, "relation_to_type": "type", "validated": true, "ani": 84.7341, "matched_fragments": 773, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter insecticola", "strain": "strain=HDW9B", "accession": "GCA_011382965.1", "taxid": 2714934, "species_taxid": 2714934, "relation_to_type": "type", "validated": true, "ani": 79.7913, "matched_fragments": 365, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 79.5455, "matched_fragments": 378, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 79.4836, "matched_fragments": 411, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter luti", "strain": "strain=RF6", "accession": "GCA_016758235.1", "taxid": 340320, "species_taxid": 340320, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3709, "matched_fragments": 386, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter ruminantium", "strain": "strain=A2", "accession": "GCA_017565705.1", "taxid": 1289170, "species_taxid": 1289170, "relation_to_type": "type", "validated": true, "ani": 79.3641, "matched_fragments": 329, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter luti", "strain": "strain=RF6", "accession": "GCA_004217175.1", "taxid": 340320, "species_taxid": 340320, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2132, "matched_fragments": 386, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", "validated": true, "ani": 79.1723, "matched_fragments": 380, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter triazinivorans", "strain": "strain=JW-1", "accession": "GCA_004208635.1", "taxid": 1784719, "species_taxid": 1784719, "relation_to_type": "type", "validated": true, "ani": 79.1109, "matched_fragments": 381, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter komagatae", "strain": "strain=DSM 8803", "accession": "GCA_006716085.1", "taxid": 55969, "species_taxid": 55969, "relation_to_type": "type", "validated": true, "ani": 79.0334, "matched_fragments": 292, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter musarum subsp. musarum", "strain": "strain=CBX152", "accession": "GCA_001273845.1", "taxid": 1461261, "species_taxid": 1930747, "relation_to_type": "type", "validated": true, "ani": 79.0248, "matched_fragments": 348, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=JG 31", "accession": "GCA_000231305.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 78.8933, "matched_fragments": 357, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter japonicus", "strain": "strain=CBX130", "accession": "GCA_001273855.1", "taxid": 1461259, "species_taxid": 1461259, "relation_to_type": "type", 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272, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces humatus", "strain": "strain=JCM 14319", "accession": "GCA_021228295.1", "taxid": 279573, "species_taxid": 279573, "relation_to_type": "type", "validated": true, "ani": 77.2063, "matched_fragments": 148, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=LMG8786T", "accession": "GCA_024997915.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 77.1435, "matched_fragments": 121, "total_fragments": 1232, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 77.1276, "matched_fragments": 95, "total_fragments": 1232, "ani_threshold": 95, "status": 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