{ "type": "genome", "identifier": "GCF_011300215.1", "organism": "Nocardioides piscis", "title": "Nocardioides piscis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011300215.1", "bioproject": "PRJNA224116", "biosample": "SAMN14260669", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2714938", "species_taxid": "2714938", "organism_name": "Nocardioides piscis", "infraspecific_name": "strain=HDW12A", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1130021v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_011300215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/300/215/GCF_011300215.1_ASM1130021v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3784668", "genome_size_ungapped": "3784668", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011300215.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3818", "protein_coding_gene_count": "3672", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides piscis" ], "sample_taxid": [ "2714938" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.016 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3784668", "Number of Sequences": "1", "Longest Sequences (bp)": "3784668", "N50 (bp)": "3784668", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "3811", "Average Protein Length": "307.2", "Coding Ratio (%)": "92.8", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides piscis", "strain": "strain=HDW12A", "accession": "GCA_011300215.1", "taxid": 2714938, "species_taxid": 2714938, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1261, "total_fragments": 1261, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides allogilvus", "strain": "strain=KCTC 49020", "accession": "GCA_003047285.1", "taxid": 2072017, "species_taxid": 2072017, "relation_to_type": "type", "validated": true, "ani": 83.8618, "matched_fragments": 829, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides currus", "strain": "strain=IB-3", "accession": "GCA_003057875.1", "taxid": 2133958, "species_taxid": 2133958, "relation_to_type": "type", "validated": true, "ani": 83.1525, "matched_fragments": 799, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides terrigena", "strain": "strain=KCTC 19217", "accession": "GCA_003047265.1", "taxid": 424797, "species_taxid": 424797, "relation_to_type": "type", "validated": true, "ani": 82.1331, "matched_fragments": 764, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sediminis", "strain": "strain=KCTC 19271", "accession": "GCA_003047295.1", "taxid": 433648, "species_taxid": 433648, "relation_to_type": "type", "validated": true, "ani": 82.0939, "matched_fragments": 766, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 81.4037, "matched_fragments": 683, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 81.3733, "matched_fragments": 726, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides alpinus", "strain": "strain=CGMCC 1.10697", "accession": "GCA_900112035.1", "taxid": 748909, "species_taxid": 748909, "relation_to_type": "type", "validated": true, "ani": 81.2071, "matched_fragments": 724, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 81.2021, "matched_fragments": 726, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 81.177, "matched_fragments": 684, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 81.0894, "matched_fragments": 708, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernae", "strain": "strain=KCTC 39551", "accession": "GCA_014779675.1", "taxid": 1921566, "species_taxid": 1921566, "relation_to_type": "type", "validated": true, "ani": 81.0132, "matched_fragments": 726, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 80.9189, "matched_fragments": 674, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": 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