{ "type": "genome", "identifier": "GCF_011302055.1", "organism": "Sphingomonas sinipercae", "title": "Sphingomonas sinipercae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011302055.1", "bioproject": "PRJNA224116", "biosample": "SAMN14260683", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2714944", "species_taxid": "2714944", "organism_name": "Sphingomonas sinipercae", "infraspecific_name": "strain=HDW15C", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1130205v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_011302055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/302/055/GCF_011302055.1_ASM1130205v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2071006", "genome_size_ungapped": "2071006", "gc_percent": "65.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011302055.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "2161", "protein_coding_gene_count": "2096", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas sinipercae" ], "sample_taxid": [ "2714944" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], 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95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011302055.1", "gtdb_species": "s__Sphingomicrobium sinipercae", "ani": 100.0, "matched_fragments": 690, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014352855.1", "gtdb_species": "s__Sphingomicrobium sp014352855", "ani": 80.1717, "matched_fragments": 422, "total_fragments": 690, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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