{ "type": "genome", "identifier": "GCF_011303955.1", "organism": "Vagococcus coleopterorum", "title": "Vagococcus coleopterorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011303955.1", "bioproject": "PRJNA224116", "biosample": "SAMN14260687", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2714946", "species_taxid": "2714946", "organism_name": "Vagococcus coleopterorum", "infraspecific_name": "strain=HDW17A", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1130395v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_011303955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/303/955/GCF_011303955.1_ASM1130395v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1530734", "genome_size_ungapped": "1530734", "gc_percent": "36.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011303955.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "1526", "protein_coding_gene_count": "1447", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Vagococcus coleopterorum" ], "sample_taxid": [ "2714946" ], "sample_host_organism": [ "Cybister lewisianus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.429 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1530734", "Number of Sequences": "1", "Longest Sequences (bp)": "1530734", "N50 (bp)": "1530734", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.6", "Number of CDSs": "1463", "Average Protein Length": "310.7", "Coding Ratio (%)": "89.1", "Number of rRNAs": "15", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vagococcus coleopterorum", "strain": "strain=HDW17A", "accession": "GCA_011303955.1", "taxid": 2714946, "species_taxid": 2714946, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 510, "total_fragments": 510, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vagococcus fessus", "strain": "strain=CCUG 41755", "accession": "GCA_003987565.1", "taxid": 120370, "species_taxid": 120370, "relation_to_type": "type", "validated": true, "ani": 79.767, "matched_fragments": 187, "total_fragments": 510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus teuberi", "strain": "strain=DSM 21459", "accession": "GCA_001870205.1", "taxid": 519472, "species_taxid": 519472, "relation_to_type": "type", "validated": true, "ani": 79.7196, "matched_fragments": 69, "total_fragments": 510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=ATCC 19433", "accession": "GCA_000392875.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 79.5737, "matched_fragments": 77, "total_fragments": 510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain=PartL-Efaecalis-RM8376", "accession": "GCA_022869705.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 78.9042, "matched_fragments": 73, "total_fragments": 510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus carniphilus", "strain": "strain=ATCC BAA-640", "accession": "GCA_014397115.1", "taxid": 218144, "species_taxid": 218144, "relation_to_type": "type", "validated": true, "ani": 78.8779, "matched_fragments": 87, "total_fragments": 510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus rotai", "strain": "strain=LMG 26678", "accession": "GCA_001465345.1", "taxid": 118060, "species_taxid": 118060, "relation_to_type": "type", "validated": true, "ani": 78.496, "matched_fragments": 72, "total_fragments": 510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus rivorum", "strain": "strain=LMG 25899", "accession": "GCA_001742285.1", 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510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus silesiacus", "strain": "strain=DSM 22801", "accession": "GCA_001886225.1", "taxid": 332949, "species_taxid": 332949, "relation_to_type": "type", "validated": true, "ani": 77.7414, "matched_fragments": 65, "total_fragments": 510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=NBRC 100480", "accession": "GCA_001544235.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 77.6655, "matched_fragments": 68, "total_fragments": 510, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=NCTC 775", "accession": "GCA_015311765.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 77.6512, "matched_fragments": 68, "total_fragments": 510, "ani_threshold": 95, "status": "below_threshold" }, { 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