{ "type": "genome", "identifier": "GCF_011304195.1", "organism": "Vagococcus hydrophili", "title": "Vagococcus hydrophili", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011304195.1", "bioproject": "PRJNA224116", "biosample": "SAMN14260688", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2714947", "species_taxid": "2714947", "organism_name": "Vagococcus hydrophili", "infraspecific_name": "strain=HDW17B", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1130419v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_011304195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/304/195/GCF_011304195.1_ASM1130419v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3045783", "genome_size_ungapped": "3045783", "gc_percent": "34.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011304195.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2985", "protein_coding_gene_count": "2832", "non_coding_gene_count": "113", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Vagococcus hydrophili" ], "sample_taxid": [ "2714947" ], "sample_host_organism": [ "Hydrophilus acuminatus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.843 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3045783", "Number of Sequences": "1", "Longest Sequences (bp)": "3045783", "N50 (bp)": "3045783", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.4", "Number of CDSs": "2914", "Average Protein Length": "308.8", "Coding Ratio (%)": "88.6", "Number of rRNAs": "24", "Number of tRNAs": "85", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vagococcus hydrophili", "strain": "strain=HDW17B", "accession": "GCA_011304195.1", "taxid": 2714947, "species_taxid": 2714947, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1013, "total_fragments": 1015, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vagococcus fluvialis", "strain": "strain=NCDO 2497", "accession": "GCA_003987575.1", "taxid": 2738, "species_taxid": 2738, "relation_to_type": "type", "validated": true, "ani": 80.1588, "matched_fragments": 388, "total_fragments": 1015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus carniphilus", "strain": "strain=ATCC BAA-640", "accession": "GCA_014397115.1", "taxid": 218144, "species_taxid": 218144, "relation_to_type": "type", "validated": true, "ani": 80.1491, "matched_fragments": 466, "total_fragments": 1015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus fluvialis", "strain": "strain=DSM 5731", "accession": "GCA_003337315.1", "taxid": 2738, "species_taxid": 2738, "relation_to_type": "type", "validated": true, "ani": 80.1072, "matched_fragments": 386, "total_fragments": 1015, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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