{ "type": "genome", "identifier": "GCF_011320115.1", "organism": "Altererythrobacter segetis", "title": "Altererythrobacter segetis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbial Ecology and Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011320115.1", "bioproject": "PRJNA224116", "biosample": "SAMN14239001", "wgs_master": "JAANOZ000000000.1", "refseq_category": "reference genome", "taxid": "1104773", "species_taxid": "1104773", "organism_name": "Altererythrobacter segetis", "infraspecific_name": "strain=YJ20", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1132011v1", "asm_submitter": "Institute of Microbial Ecology and Resources", "gbrs_paired_asm": "GCA_011320115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/320/115/GCF_011320115.1_ASM1132011v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3293016", "genome_size_ungapped": "3293016", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011320115.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "3341", "protein_coding_gene_count": "3259", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Altererythrobacter segetis" ], "sample_taxid": [ "1104773" ], "sample_host_organism": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 78.7644, "matched_fragments": 338, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_000714795.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 78.7604, "matched_fragments": 334, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_001719165.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 78.7038, "matched_fragments": 341, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium endophyticum", "strain": "strain=CGMCC 1.15095", "accession": "GCA_014640675.1", "taxid": 1955250, "species_taxid": 1955250, "relation_to_type": "type", "validated": true, "ani": 78.6244, "matched_fragments": 335, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium ginsenosidimutans", "strain": "strain=FW-6", "accession": "GCA_007954425.1", "taxid": 1176536, "species_taxid": 1176536, "relation_to_type": "type", "validated": true, "ani": 78.5648, "matched_fragments": 300, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 78.5599, "matched_fragments": 335, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 78.4423, "matched_fragments": 313, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 78.4355, "matched_fragments": 315, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter neustonensis", "strain": "strain=DSM 9434", "accession": "GCA_001663175.1", "taxid": 1112, "species_taxid": 1112, "relation_to_type": "type", "validated": true, "ani": 78.4302, "matched_fragments": 310, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", 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1572751, "species_taxid": 1572751, "relation_to_type": "type", "validated": true, "ani": 78.1236, "matched_fragments": 334, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011320115.1", "gtdb_species": "s__Croceibacterium segetis", "ani": 100.0, "matched_fragments": 1076, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009828065.1", "gtdb_species": "s__Croceibacterium soli", "ani": 81.668, "matched_fragments": 600, "total_fragments": 1078, "gtdb_taxonomy": 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