{ "type": "genome", "identifier": "GCF_011320225.1", "organism": "Phytoactinopolyspora limicola", "title": "Phytoactinopolyspora limicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011320225.1", "bioproject": "PRJNA224116", "biosample": "SAMN14299272", "wgs_master": "JAAOEN000000000.1", "refseq_category": "reference genome", "taxid": "2715536", "species_taxid": "2715536", "organism_name": "Phytoactinopolyspora limicola", "infraspecific_name": "strain=HAJB-30", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1132022v1", "asm_submitter": "Jiangsu University", "gbrs_paired_asm": "GCA_011320225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/320/225/GCF_011320225.1_ASM1132022v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6590001", "genome_size_ungapped": "6589901", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011320225.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5962", "protein_coding_gene_count": "5818", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Phytoactinopolyspora limicola" ], "sample_taxid": [ "2715536" ], "sample_host_organism": [ "alkali-saline soil" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Heilongjiang Province, Anda City" ], "sample_host_location_id": [], "data_size": "1.814 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6590001", "Number of Sequences": "40", "Longest Sequences (bp)": "1158724", "N50 (bp)": "332324", "Gap Ratio (%)": "0.001517", "GCcontent (%)": "66.9", "Number of CDSs": "5979", "Average Protein Length": "323.6", "Coding Ratio (%)": "88.1", "Number of rRNAs": "6", "Number of tRNAs": "58", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phytoactinopolyspora limicola", "strain": "strain=HAJB-30", "accession": "GCA_011320225.1", "taxid": 2715536, "species_taxid": 2715536, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2171, "total_fragments": 2177, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Phytoactinopolyspora mesophila", "strain": "strain=XMNu-373", "accession": "GCA_010122465.1", "taxid": 2650750, "species_taxid": 2650750, "relation_to_type": "type", "validated": true, "ani": 79.6806, "matched_fragments": 887, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytoactinopolyspora alkaliphila", "strain": "strain=CGMCC 4.7225", "accession": "GCA_010550695.1", "taxid": 1783498, "species_taxid": 1783498, "relation_to_type": "type", "validated": true, "ani": 78.4498, "matched_fragments": 608, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytoactinopolyspora halotolerans", "strain": "strain=CCTCC AB 2017055", "accession": "GCA_010550675.1", "taxid": 1981512, "species_taxid": 1981512, "relation_to_type": "type", "validated": 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"total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella anatolica", "strain": "strain=GTF31", "accession": "GCA_003236295.1", "taxid": 2670374, "species_taxid": 2670374, "relation_to_type": "type", "validated": true, "ani": 77.4068, "matched_fragments": 579, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella rhizosphaerae", "strain": "strain=NEAU-YY265", "accession": "GCA_003579925.1", "taxid": 2293569, "species_taxid": 2293569, "relation_to_type": "type", "validated": true, "ani": 77.306, "matched_fragments": 601, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=YIM 61503", "accession": "GCA_001708125.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 77.2746, "matched_fragments": 622, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 77.2675, "matched_fragments": 627, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 75.9854, "matched_fragments": 265, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora flava", "strain": "strain=DSM 44771", "accession": "GCA_900116135.1", "taxid": 95161, "species_taxid": 95161, "relation_to_type": "type", "validated": true, "ani": 75.8266, "matched_fragments": 243, "total_fragments": 2177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea 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