{ "type": "genome", "identifier": "GCF_011382965.1", "organism": "Leucobacter insecticola", "title": "Leucobacter insecticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011382965.1", "bioproject": "PRJNA224116", "biosample": "SAMN14260664", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2714934", "species_taxid": "2714934", "organism_name": "Leucobacter insecticola", "infraspecific_name": "strain=HDW9B", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/17", "asm_name": "ASM1138296v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_011382965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/382/965/GCF_011382965.1_ASM1138296v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2916402", "genome_size_ungapped": "2916402", "gc_percent": "62.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011382965.1-RS_2024_04_23", "annotation_date": "2024-04-23", "total_gene_count": "2837", "protein_coding_gene_count": "2564", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-17", "dateModified": "2020-03-17", "datePublished": "2020-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter insecticola" ], "sample_taxid": [ "2714934" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.816 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2916402", "Number of Sequences": "1", "Longest Sequences (bp)": "2916402", "N50 (bp)": "2916402", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.5", "Number of CDSs": "2949", "Average Protein Length": "292.4", "Coding Ratio (%)": "88.7", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter insecticola", "strain": "strain=HDW9B", "accession": "GCA_011382965.1", "taxid": 2714934, "species_taxid": 2714934, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 972, "total_fragments": 972, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leucobacter viscericola", "strain": "strain=HDW9C", "accession": "GCA_011299575.1", "taxid": 2714935, "species_taxid": 2714935, "relation_to_type": "type", "validated": true, "ani": 79.6082, "matched_fragments": 375, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter coleopterorum", "strain": "strain=HDW9A", "accession": "GCA_011382985.1", "taxid": 2714933, "species_taxid": 2714933, "relation_to_type": "type", "validated": true, "ani": 79.2649, "matched_fragments": 328, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter luti", "strain": "strain=RF6", "accession": "GCA_016758235.1", "taxid": 340320, "species_taxid": 340320, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0066, "matched_fragments": 345, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 78.9405, "matched_fragments": 360, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter luti", "strain": "strain=RF6", "accession": "GCA_004217175.1", "taxid": 340320, "species_taxid": 340320, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8643, "matched_fragments": 344, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 78.8244, "matched_fragments": 356, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter massiliensis", "strain": "strain=122RC15", "accession": "GCA_002982315.1", "taxid": 1686285, "species_taxid": 1686285, "relation_to_type": "type", "validated": true, "ani": 78.7288, "matched_fragments": 311, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter triazinivorans", "strain": "strain=JW-1", "accession": "GCA_004208635.1", "taxid": 1784719, "species_taxid": 1784719, "relation_to_type": "type", "validated": true, "ani": 78.6324, "matched_fragments": 361, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter celer subsp. astrifaciens", "strain": "strain=CBX151", "accession": "GCA_001273835.1", "taxid": 1461260, "species_taxid": 668625, "relation_to_type": "type", "validated": true, "ani": 78.6272, "matched_fragments": 379, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiisoli", "strain": "strain=CSA1", "accession": "GCA_016522505.1", "taxid": 2796471, 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true, "ani": 78.3115, "matched_fragments": 326, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter exalbidus", "strain": "strain=DSM 22850", "accession": "GCA_017834145.1", "taxid": 662960, "species_taxid": 662960, "relation_to_type": "type", "validated": true, "ani": 78.186, "matched_fragments": 240, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium invictum", "strain": "strain=DSM 19600", "accession": "GCA_023155715.1", "taxid": 515415, "species_taxid": 515415, "relation_to_type": "type", "validated": true, "ani": 77.5795, "matched_fragments": 116, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium invictum", "strain": "strain=JCM 17023", "accession": "GCA_015278285.1", "taxid": 515415, "species_taxid": 515415, "relation_to_type": "type", "validated": true, "ani": 77.5535, "matched_fragments": 115, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces archimandritae", "strain": "strain=G127AT", "accession": "GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 77.4252, "matched_fragments": 128, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 77.3291, "matched_fragments": 114, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 77.2932, "matched_fragments": 130, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces agglutinans", "strain": "strain=CFH 90414", "accession": "GCA_009647605.1", "taxid": 2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 77.2612, "matched_fragments": 138, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 77.2185, "matched_fragments": 132, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium pullorum", "strain": "strain=Sa4CUA7", "accession": "GCA_014836535.1", "taxid": 2762236, "species_taxid": 2762236, "relation_to_type": "type", "validated": true, "ani": 77.1322, "matched_fragments": 111, "total_fragments": 972, "ani_threshold": 95, "status": "below_threshold" }, { 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