{ "type": "genome", "identifier": "GCF_011392075.1", "organism": "Flavobacterium celericrescens", "title": "Flavobacterium celericrescens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011392075.1", "bioproject": "PRJNA224116", "biosample": "SAMN14102324", "wgs_master": "JAAJBV000000000.1", "refseq_category": "reference genome", "taxid": "2709780", "species_taxid": "2709780", "organism_name": "Flavobacterium celericrescens", "infraspecific_name": "strain=TWA-26", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/17", "asm_name": "ASM1139207v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_011392075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/392/075/GCF_011392075.1_ASM1139207v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2799677", "genome_size_ungapped": "2799677", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011392075.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2595", "protein_coding_gene_count": "2526", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-17", "dateModified": "2020-03-17", "datePublished": "2020-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium celericrescens" ], "sample_taxid": [ "2709780" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "0.772 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2799677", "Number of Sequences": "38", "Longest Sequences (bp)": "591216", "N50 (bp)": "307729", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.8", "Number of CDSs": "2527", "Average Protein Length": "334.0", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium celericrescens", "strain": "strain=TWA-26", "accession": "GCA_011392075.1", "taxid": 2709780, "species_taxid": 2709780, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 921, "total_fragments": 922, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium aquaticum", "strain": "strain=CGMCC 1.12398", "accession": "GCA_003259835.1", "taxid": 1236486, "species_taxid": 1236486, "relation_to_type": "type", "validated": true, "ani": 84.8995, "matched_fragments": 630, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sasangense", "strain": "strain=DSM 21067", "accession": "GCA_000686885.1", "taxid": 503361, "species_taxid": 503361, "relation_to_type": "type", "validated": true, "ani": 84.6594, "matched_fragments": 634, "total_fragments": 922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, 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"status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011392075.1", "gtdb_species": "s__Flavobacterium celericrescens", "ani": 100.0, "matched_fragments": 921, "total_fragments": 922, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003259835.1", "gtdb_species": "s__Flavobacterium aquaticum", "ani": 84.9259, "matched_fragments": 628, "total_fragments": 922, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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