{
    "type": "genome",
    "identifier": "GCF_011398155.1",
    "organism": "Thiosulfativibrio zosterae",
    "title": "Thiosulfativibrio zosterae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Hokkaido University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011398155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00194003",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2675053",
        "species_taxid": "2675053",
        "organism_name": "Thiosulfativibrio zosterae",
        "infraspecific_name": "strain=AkT22",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/10",
        "asm_name": "ASM1139815v1",
        "asm_submitter": "Hokkaido University",
        "gbrs_paired_asm": "GCA_011398155.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/398/155/GCF_011398155.1_ASM1139815v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2645427",
        "genome_size_ungapped": "2645427",
        "gc_percent": "43.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011398155.1-RS_2024_04_28",
        "annotation_date": "2024-04-28",
        "total_gene_count": "2413",
        "protein_coding_gene_count": "2351",
        "non_coding_gene_count": "55",
        "pubmed_id": "33084949"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-10",
    "dateModified": "2020-03-10",
    "datePublished": "2020-03-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thiosulfativibrio zosterae"
        ],
        "sample_taxid": [
            "2675053"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Hokkaido, Akkeshi, Lake Akkeshi"
        ],
        "sample_host_location_id": [],
        "data_size": "0.742 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2645427",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2645427",
        "N50 (bp)": "2645427",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.2",
        "Number of CDSs": "2373",
        "Average Protein Length": "340.3",
        "Coding Ratio (%)": "91.6",
        "Number of rRNAs": "9",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thiosulfativibrio zosterae",
                "strain": "strain=AkT22",
                "accession": "GCA_011398155.1",
                "taxid": 2675053,
                "species_taxid": 2675053,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 877,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Hydrogenovibrio marinus",
                "strain": "strain=MH-110",
                "accession": "GCA_013340845.1",
                "taxid": 28885,
                "species_taxid": 28885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2854,
                "matched_fragments": 98,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus immobilis",
                "strain": "strain=Am19",
                "accession": "GCA_021654855.1",
                "taxid": 2791037,
                "species_taxid": 2791037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1177,
                "matched_fragments": 111,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenovibrio marinus",
                "strain": "strain=DSM 11271",
                "accession": "GCA_000711315.1",
                "taxid": 28885,
                "species_taxid": 28885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.094,
                "matched_fragments": 105,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus indica",
                "strain": "strain=13-15A",
                "accession": "GCA_004293625.1",
                "taxid": 2267253,
                "species_taxid": 2267253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8478,
                "matched_fragments": 79,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenovibrio kuenenii",
                "strain": "strain=DSM 12350",
                "accession": "GCA_000526715.1",
                "taxid": 63658,
                "species_taxid": 63658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8416,
                "matched_fragments": 106,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus sediminis",
                "strain": "strain=G1",
                "accession": "GCA_005885815.1",
                "taxid": 2580412,
                "species_taxid": 2580412,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8304,
                "matched_fragments": 82,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus aquaedulcis",
                "strain": "strain=HaS4",
                "accession": "GCA_004001325.1",
                "taxid": 2211106,
                "species_taxid": 2211106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6557,
                "matched_fragments": 133,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus chilensis",
                "strain": "strain=DSM 12352",
                "accession": "GCA_000483485.1",
                "taxid": 63656,
                "species_taxid": 63656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4138,
                "matched_fragments": 105,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrospira pelophila",
                "strain": "strain=DSM 1534",
                "accession": "GCA_000711195.1",
                "taxid": 934,
                "species_taxid": 934,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.37,
                "matched_fragments": 86,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus heinhorstiae",
                "strain": "strain=HH1",
                "accession": "GCA_013391765.2",
                "taxid": 2748010,
                "species_taxid": 2748010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3239,
                "matched_fragments": 59,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenovibrio marinus",
                "strain": "strain=MH-110",
                "accession": "GCA_000696325.1",
                "taxid": 28885,
                "species_taxid": 28885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3029,
                "matched_fragments": 97,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrospira cyclica",
                "strain": "strain=ALM1",
                "accession": "GCA_000214825.1",
                "taxid": 147268,
                "species_taxid": 147268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0695,
                "matched_fragments": 69,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrospira microaerophila",
                "strain": "strain=ASL8-2",
                "accession": "GCA_000934765.1",
                "taxid": 406020,
                "species_taxid": 406020,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0334,
                "matched_fragments": 66,
                "total_fragments": 881,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_011398155.1",
                "gtdb_species": "s__Thiosulfativibrio zosterae",
                "ani": 100.0,
                "matched_fragments": 876,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiosulfativibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005885815.1",
                "gtdb_species": "s__Thiomicrorhabdus sediminis",
                "ani": 77.9704,
                "matched_fragments": 84,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000012605.1",
                "gtdb_species": "s__Hydrogenovibrio crunogenus_A",
                "ani": 77.8299,
                "matched_fragments": 107,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009296185.1",
                "gtdb_species": "s__Hydrogenovibrio sp009296185",
                "ani": 77.8152,
                "matched_fragments": 94,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.60",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000526715.1",
                "gtdb_species": "s__Hydrogenovibrio kuenenii",
                "ani": 77.7659,
                "matched_fragments": 107,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001507555.1",
                "gtdb_species": "s__Hydrogenovibrio sp001507555",
                "ani": 77.7049,
                "matched_fragments": 98,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004001325.1",
                "gtdb_species": "s__Thiomicrorhabdus aquaedulcis",
                "ani": 77.6829,
                "matched_fragments": 134,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000744875.1",
                "gtdb_species": "s__Hydrogenovibrio sp000744875",
                "ani": 77.6464,
                "matched_fragments": 91,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004293625.1",
                "gtdb_species": "s__Thiomicrorhabdus indica",
                "ani": 77.6317,
                "matched_fragments": 78,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004786015.1",
                "gtdb_species": "s__Hydrogenovibrio crunogenus_B",
                "ani": 77.5713,
                "matched_fragments": 92,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.95",
                "min_intra_species_ani": "96.95",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000478585.1",
                "gtdb_species": "s__Thiomicrorhabdus sp000478585",
                "ani": 77.4777,
                "matched_fragments": 116,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016938655.1",
                "gtdb_species": "s__Thiomicrorhabdus sp016938655",
                "ani": 77.2886,
                "matched_fragments": 138,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013391765.2",
                "gtdb_species": "s__Thiomicrorhabdus sp013391765",
                "ani": 77.2725,
                "matched_fragments": 61,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000214825.1",
                "gtdb_species": "s__Thiomicrospira cyclica",
                "ani": 77.0695,
                "matched_fragments": 69,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006222135.1",
                "gtdb_species": "s__Thiomicrorhabdus sp006222135",
                "ani": 76.5081,
                "matched_fragments": 73,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016936535.1",
                "gtdb_species": "s__Thiomicrorhabdus sp016936535",
                "ani": 76.4612,
                "matched_fragments": 65,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015484555.1",
                "gtdb_species": "s__Hydrogenovibrio sp015484555",
                "ani": 76.3541,
                "matched_fragments": 74,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.62",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014859555.1",
                "gtdb_species": "s__Thiomicrospira sp014859555",
                "ani": 76.2156,
                "matched_fragments": 78,
                "total_fragments": 881,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Thiosulfativibrio",
        "zosterae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}