{
    "type": "genome",
    "identifier": "GCF_011405655.1",
    "organism": "Adlercreutzia hattorii",
    "title": "Adlercreutzia hattorii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011405655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00204449",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2707299",
        "species_taxid": "2707299",
        "organism_name": "Adlercreutzia hattorii",
        "infraspecific_name": "strain=8CFCBH1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/02",
        "asm_name": "ASM1140565v1",
        "asm_submitter": "Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN",
        "gbrs_paired_asm": "GCA_011405655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/405/655/GCF_011405655.1_ASM1140565v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2908404",
        "genome_size_ungapped": "2908404",
        "gc_percent": "63.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011405655.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "2500",
        "protein_coding_gene_count": "2421",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-02",
    "dateModified": "2020-03-02",
    "datePublished": "2020-03-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Adlercreutzia hattorii"
        ],
        "sample_taxid": [
            "2707299"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.808 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2908404",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2908404",
        "N50 (bp)": "2908404",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.0",
        "Number of CDSs": "2452",
        "Average Protein Length": "342.7",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "9",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Adlercreutzia hattorii",
                "strain": "strain=8CFCBH1",
                "accession": "GCA_011405655.1",
                "taxid": 2707299,
                "species_taxid": 2707299,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 967,
                "total_fragments": 969,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. equolifaciens",
                "strain": "strain=DSM 19450",
                "accession": "GCA_000478885.1",
                "taxid": 2864143,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.9487,
                "matched_fragments": 729,
                "total_fragments": 969,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. celatus",
                "strain": "strain=DSM 18785",
                "accession": "GCA_024171685.1",
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                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.6782,
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                "total_fragments": 969,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. celatus",
                "strain": "strain=JCM 14811",
                "accession": "GCA_016865385.1",
                "taxid": 394340,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.6277,
                "matched_fragments": 738,
                "total_fragments": 969,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. celatus",
                "strain": "strain=JCM 14811",
                "accession": "GCA_003428485.1",
                "taxid": 394340,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.5723,
                "matched_fragments": 700,
                "total_fragments": 969,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia equolifaciens subsp. celatus",
                "strain": "strain=DSM 18785",
                "accession": "GCA_003726015.1",
                "taxid": 394340,
                "species_taxid": 446660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.4656,
                "matched_fragments": 722,
                "total_fragments": 969,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_011405655.1",
                "gtdb_species": "s__Adlercreutzia celatus_A",
                "ani": 100.0,
                "matched_fragments": 967,
                "total_fragments": 969,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.32",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000478885.1",
                "gtdb_species": "s__Adlercreutzia equolifaciens",
                "ani": 93.9423,
                "matched_fragments": 729,
                "total_fragments": 969,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "95.56",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_008831045.1",
                "gtdb_species": "s__Adlercreutzia muris",
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                "total_fragments": 969,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.80",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000403355.2",
                "gtdb_species": "s__Adlercreutzia caecimuris",
                "ani": 84.5671,
                "matched_fragments": 568,
                "total_fragments": 969,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.41",
                "min_intra_species_ani": "97.35",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_910589165.1",
                "gtdb_species": "s__Adlercreutzia sp910589165",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Adlercreutzia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000422625.1",
                "gtdb_species": "s__Adlercreutzia mucosicola",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910589695.1",
                "gtdb_species": "s__QWKK01 sp910589695",
                "ani": 80.8687,
                "matched_fragments": 336,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__QWKK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013185065.1",
                "gtdb_species": "s__CAAEEV01 sp013185065",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
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                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.188,
        "cell_length": 0.322,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2862527.0,
        "gc_content": 63.5,
        "coding_genes": 2245.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.0,
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        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Adlercreutzia",
        "hattorii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}