{ "type": "genome", "identifier": "GCF_011420305.2", "organism": "Nocardioides ochotonae", "title": "Nocardioides ochotonae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011420305.2", "bioproject": "PRJNA224116", "biosample": "SAMN13510311", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2685869", "species_taxid": "2685869", "organism_name": "Nocardioides ochotonae", "infraspecific_name": "strain=ZJ1313", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/29", "asm_name": "ASM1142030v2", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_011420305.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/420/305/GCF_011420305.2_ASM1142030v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4264922", "genome_size_ungapped": "4264922", "gc_percent": "72.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011420305.2-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "4108", "protein_coding_gene_count": "4030", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-29", "dateModified": "2020-09-29", "datePublished": "2020-09-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides ochotonae" ], "sample_taxid": [ "2685869" ], "sample_host_organism": [ "plateau pika" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.122 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4264922", "Number of Sequences": "1", "Longest Sequences (bp)": "4264922", "N50 (bp)": "4264922", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.5", "Number of CDSs": "4106", "Average Protein Length": "319.0", "Coding Ratio (%)": "92.1", "Number of rRNAs": "12", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, 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"ani": 82.2821, "matched_fragments": 810, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 82.2609, "matched_fragments": 795, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 82.1993, "matched_fragments": 865, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 82.1847, "matched_fragments": 858, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_016907435.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 82.1736, "matched_fragments": 793, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015070765.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 82.1114, "matched_fragments": 794, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 82.0957, "matched_fragments": 795, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 82.0439, "matched_fragments": 747, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 82.0393, "matched_fragments": 715, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ferulae", "strain": "strain=SZ4R5S7", "accession": "GCA_003660455.1", "taxid": 2340821, "species_taxid": 2340821, "relation_to_type": "type", "validated": true, "ani": 81.9961, "matched_fragments": 794, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 81.9836, "matched_fragments": 762, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 81.7622, "matched_fragments": 773, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 81.6374, "matched_fragments": 739, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides 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