{ "type": "genome", "identifier": "GCF_011421635.1", "organism": "Paenibacillus turpanensis", "title": "Paenibacillus turpanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan institute of microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011421635.1", "bioproject": "PRJNA224116", "biosample": "SAMN13569955", "wgs_master": "WTLI00000000.1", "refseq_category": "reference genome", "taxid": "2689078", "species_taxid": "2689078", "organism_name": "Paenibacillus turpanensis", "infraspecific_name": "strain=YIM B00363", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/18", "asm_name": "ASM1142163v1", "asm_submitter": "Yunnan institute of microbiology", "gbrs_paired_asm": "GCA_011421635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/421/635/GCF_011421635.1_ASM1142163v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4966221", "genome_size_ungapped": "4966221", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "78", "contig_count": "78", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011421635.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "4602", "protein_coding_gene_count": "4519", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-18", "dateModified": "2020-03-18", "datePublished": "2020-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus turpanensis" ], "sample_taxid": [ "2689078" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: XinJiang" ], "sample_host_location_id": [], "data_size": "1.418 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4966221", "Number of Sequences": "78", "Longest Sequences (bp)": "336632", "N50 (bp)": "184517", "Gap Ratio (%)": "0.000362", "GCcontent (%)": "50.4", "Number of CDSs": "4559", "Average Protein Length": "316.2", "Coding Ratio (%)": "87.1", "Number of rRNAs": "1", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus turpanensis", "strain": "strain=YIM B00363", "accession": "GCA_011421635.1", "taxid": 2689078, "species_taxid": 2689078, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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2495582, "relation_to_type": "type", "validated": true, "ani": 75.9898, "matched_fragments": 90, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albicereus", "strain": "strain=UniB2", "accession": "GCA_012676905.1", "taxid": 2726185, "species_taxid": 2726185, "relation_to_type": "type", "validated": true, "ani": 75.9894, "matched_fragments": 108, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus contaminans", "strain": "strain=CKOBP-6", "accession": "GCA_003285015.1", "taxid": 450362, "species_taxid": 450362, "relation_to_type": "type", "validated": true, "ani": 75.9837, "matched_fragments": 136, "total_fragments": 1622, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oceani", "strain": "strain=IB182363", "accession": "GCA_014705615.1", "taxid": 2772510, "species_taxid": 2772510, "relation_to_type": "type", "validated": true, 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