{
    "type": "genome",
    "identifier": "GCF_011492945.1",
    "organism": "Rubrobacter tropicus",
    "title": "Rubrobacter tropicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "South China Sea Institute of Oceanology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011492945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13017844",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2653851",
        "species_taxid": "2653851",
        "organism_name": "Rubrobacter tropicus",
        "infraspecific_name": "strain=SCSIO 52909",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/19",
        "asm_name": "ASM1149294v1",
        "asm_submitter": "South China Sea Institute of Oceanology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_011492945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/492/945/GCF_011492945.1_ASM1149294v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4584100",
        "genome_size_ungapped": "4584100",
        "gc_percent": "67.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011492945.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4660",
        "protein_coding_gene_count": "4509",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-19",
    "dateModified": "2020-03-19",
    "datePublished": "2020-03-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rubrobacter tropicus"
        ],
        "sample_taxid": [
            "2653851"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: the South China Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.263 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.78,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4584100",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "4378772",
        "N50 (bp)": "4378772",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.0",
        "Number of CDSs": "4641",
        "Average Protein Length": "292.5",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rubrobacter tropicus",
                "strain": "strain=SCSIO 52909",
                "accession": "GCA_011492945.1",
                "taxid": 2653851,
                "species_taxid": 2653851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1527,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rubrobacter marinus",
                "strain": "strain=SCSIO 52915",
                "accession": "GCA_011492965.1",
                "taxid": 2653852,
                "species_taxid": 2653852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0002,
                "matched_fragments": 548,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubrobacter radiotolerans",
                "strain": "strain=DSM 5868",
                "accession": "GCA_900175965.1",
                "taxid": 42256,
                "species_taxid": 42256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8257,
                "matched_fragments": 337,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubrobacter aplysinae",
                "strain": "strain=RV113",
                "accession": "GCA_001029505.1",
                "taxid": 909625,
                "species_taxid": 909625,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6124,
                "matched_fragments": 297,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubrobacter indicoceani",
                "strain": "strain=SCSIO 08198",
                "accession": "GCA_003568865.1",
                "taxid": 2051957,
                "species_taxid": 2051957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1432,
                "matched_fragments": 247,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces decoyicus",
                "strain": "strain=NRRL 2666",
                "accession": "GCA_001270575.1",
                "taxid": 249567,
                "species_taxid": 249567,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2727,
                "matched_fragments": 112,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraconexibacter algicola",
                "strain": "strain=Seoho-28",
                "accession": "GCA_003044185.1",
                "taxid": 2133960,
                "species_taxid": 2133960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2086,
                "matched_fragments": 130,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes utahensis",
                "strain": "strain=NBRC 13244",
                "accession": "GCA_016862455.1",
                "taxid": 1869,
                "species_taxid": 1869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9944,
                "matched_fragments": 130,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura viridis",
                "strain": "strain=DSM 43175",
                "accession": "GCA_015751755.1",
                "taxid": 58110,
                "species_taxid": 58110,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9765,
                "matched_fragments": 138,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deinococcus metalli",
                "strain": "strain=DSM 27521",
                "accession": "GCA_014201805.1",
                "taxid": 1141878,
                "species_taxid": 1141878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9632,
                "matched_fragments": 58,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermomonospora echinospora",
                "strain": "strain=DSM 43163",
                "accession": "GCA_900108175.1",
                "taxid": 1992,
                "species_taxid": 1992,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9284,
                "matched_fragments": 127,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sedi",
                "strain": "strain=JCM 16909",
                "accession": "GCA_006335015.1",
                "taxid": 555059,
                "species_taxid": 555059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9052,
                "matched_fragments": 107,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces radicis",
                "strain": "strain=DS1-2",
                "accession": "GCA_003626575.1",
                "taxid": 1750517,
                "species_taxid": 1750517,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8121,
                "matched_fragments": 137,
                "total_fragments": 1527,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.78,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_011492945.1",
                "gtdb_species": "s__SCSIO-52909 sp011492945",
                "ani": 100.0,
                "matched_fragments": 1527,
                "total_fragments": 1527,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__SCSIO-52909",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902806085.1",
                "gtdb_species": "s__SCSIO-52909 sp902806085",
                "ani": 85.1787,
                "matched_fragments": 915,
                "total_fragments": 1527,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__SCSIO-52909",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013815575.1",
                "gtdb_species": "s__SCSIO-52909 sp013815575",
                "ani": 84.2976,
                "matched_fragments": 476,
                "total_fragments": 1527,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__SCSIO-52909",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.69",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.64",
                "min_intra_species_af": "0.64",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902805975.1",
                "gtdb_species": "s__SCSIO-52909 sp902805975",
                "ani": 83.6028,
                "matched_fragments": 706,
                "total_fragments": 1527,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__SCSIO-52909",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902805985.1",
                "gtdb_species": "s__SCSIO-52909 sp902805985",
                "ani": 83.5718,
                "matched_fragments": 641,
                "total_fragments": 1527,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__SCSIO-52909",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902806015.1",
                "gtdb_species": "s__SCSIO-52909 sp902806015",
                "ani": 83.4287,
                "matched_fragments": 601,
                "total_fragments": 1527,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__SCSIO-52909",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016781725.1",
                "gtdb_species": "s__SCSIO-52909 sp016781725",
                "ani": 79.9969,
                "matched_fragments": 403,
                "total_fragments": 1527,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__SCSIO-52909",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.72",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013812245.1",
                "gtdb_species": "s__JACDGB01 sp013812245",
                "ani": 78.3881,
                "matched_fragments": 330,
                "total_fragments": 1527,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Rubrobacteria;o__Rubrobacterales;f__Rubrobacteraceae;g__JACDGB01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.055,
        "cell_length": 0.1,
        "doubling_h": 0.532,
        "growth_tmp": 41.853,
        "optimum_tmp": 59.833,
        "optimum_ph": 7.875,
        "genome_size": 3242668.383,
        "gc_content": 68.326,
        "coding_genes": 3107.5,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Rubrobacter",
        "tropicus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}