{ "type": "genome", "identifier": "GCF_011516735.1", "organism": "Acetobacter fallax", "title": "Acetobacter fallax", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011516735.1", "bioproject": "PRJNA224116", "biosample": "SAMN13343657", "wgs_master": "WOSX00000000.1", "refseq_category": "reference genome", "taxid": "1737473", "species_taxid": "1737473", "organism_name": "Acetobacter fallax", "infraspecific_name": "strain=LMG 1636", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/19", "asm_name": "ASM1151673v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_011516735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/516/735/GCF_011516735.1_ASM1151673v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4217005", "genome_size_ungapped": "4217005", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "163", "contig_count": "163", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011516735.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3831", "protein_coding_gene_count": "3616", "non_coding_gene_count": "51", "pubmed_id": "33052084" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-19", "dateModified": "2020-03-19", "datePublished": "2020-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter fallax" ], "sample_taxid": [ "1737473" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.195 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4217005", "Number of Sequences": "163", "Longest Sequences (bp)": "484166", "N50 (bp)": "88078", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.3", "Number of CDSs": "3734", "Average Protein Length": "314.7", "Coding Ratio (%)": "83.6", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter fallax", "strain": "strain=LMG 1636", "accession": "GCA_011516735.1", "taxid": 1737473, "species_taxid": 1737473, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1332, "total_fragments": 1336, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter oeni", "strain": "strain=DSM 23926", "accession": "GCA_014196315.1", "taxid": 304077, "species_taxid": 304077, "relation_to_type": "type", "validated": true, "ani": 81.8764, "matched_fragments": 708, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter oeni", "strain": "strain=LMG 21952", "accession": "GCA_011516825.1", "taxid": 304077, "species_taxid": 304077, "relation_to_type": "type", "validated": true, "ani": 81.8197, "matched_fragments": 712, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=NBRC 14818", "accession": "GCA_000193495.2", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 81.0504, "matched_fragments": 323, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": 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81.8588, "matched_fragments": 706, "total_fragments": 1336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000193495.2", "gtdb_species": "s__Acetobacter aceti", "ani": 81.0195, "matched_fragments": 324, "total_fragments": 1336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_011516765.1", "gtdb_species": "s__Acetobacter sicerae", "ani": 80.546, "matched_fragments": 317, "total_fragments": 1336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011516945.1", "gtdb_species": "s__Acetobacter estunensis", "ani": 80.1901, "matched_fragments": 264, "total_fragments": 1336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002005445.1", "gtdb_species": "s__Acetobacter aceti_B", "ani": 79.1956, "matched_fragments": 265, "total_fragments": 1336, 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