{ "type": "genome", "identifier": "GCF_011516745.1", "organism": "Acetobacter peroxydans", "title": "Acetobacter peroxydans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011516745.1", "bioproject": "PRJNA224116", "biosample": "SAMN13343653", "wgs_master": "WOSZ00000000.1", "refseq_category": "na", "taxid": "104098", "species_taxid": "104098", "organism_name": "Acetobacter peroxydans", "infraspecific_name": "strain=LMG 1635", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/19", "asm_name": "ASM1151674v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_011516745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/516/745/GCF_011516745.1_ASM1151674v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2711062", "genome_size_ungapped": "2711062", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011516745.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2501", "protein_coding_gene_count": "2429", "non_coding_gene_count": "52", "pubmed_id": "33052084" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-19", "dateModified": "2020-03-19", "datePublished": "2020-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter peroxydans" ], "sample_taxid": [ "104098" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Netherlands" ], "sample_host_location_id": [], "data_size": "0.763 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2711062", "Number of Sequences": "16", "Longest Sequences (bp)": "739125", "N50 (bp)": "405980", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "2470", "Average Protein Length": "325.7", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter peroxydans", "strain": "strain=LMG 1635", "accession": "GCA_011516745.1", "taxid": 104098, "species_taxid": 104098, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 893, "total_fragments": 895, "ani_threshold": 95, "status": "conclusive" }, { 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"strain=DSM 4491", "accession": "GCA_014207635.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 79.6138, "matched_fragments": 372, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter fabarum", "strain": "strain=LMG 24244", "accession": "GCA_011516925.1", "taxid": 483199, "species_taxid": 483199, "relation_to_type": "type", "validated": true, "ani": 79.5944, "matched_fragments": 376, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=LMG 1617", "accession": "GCA_011516875.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 79.5568, "matched_fragments": 370, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter okinawensis", "strain": "strain=JCM 25146", "accession": "GCA_000613865.1", "taxid": 1076594, "species_taxid": 1076594, "relation_to_type": "type", "validated": true, "ani": 79.2161, "matched_fragments": 342, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter ghanensis", "strain": "strain=LMG 23848", "accession": "GCA_011516865.1", "taxid": 431306, "species_taxid": 431306, "relation_to_type": "type", "validated": true, "ani": 79.0801, "matched_fragments": 362, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter senegalensis", "strain": "strain=LMG 23690", "accession": "GCA_001580995.1", "taxid": 446692, "species_taxid": 446692, "relation_to_type": "type", "validated": true, "ani": 78.6265, "matched_fragments": 248, "total_fragments": 895, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter sucrofermentans", "strain": "strain=LMG 18788", "accession": "GCA_003207865.1", "taxid": 1053551, "species_taxid": 1053551, 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95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006539345.1", "gtdb_species": "s__Acetobacter peroxydans", "ani": 99.9893, "matched_fragments": 882, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000613285.1", "gtdb_species": "s__Acetobacter papayae", "ani": 86.2992, "matched_fragments": 678, "total_fragments": 895, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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