{ "type": "genome", "identifier": "GCF_011516755.1", "organism": "Acetobacter conturbans", "title": "Acetobacter conturbans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011516755.1", "bioproject": "PRJNA224116", "biosample": "SAMN13343656", "wgs_master": "WOSY00000000.1", "refseq_category": "reference genome", "taxid": "1737472", "species_taxid": "1737472", "organism_name": "Acetobacter conturbans", "infraspecific_name": "strain=LMG 1627", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/19", "asm_name": "ASM1151675v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_011516755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/516/755/GCF_011516755.1_ASM1151675v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3884131", "genome_size_ungapped": "3884131", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "88", "contig_count": "88", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011516755.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3519", "protein_coding_gene_count": "3364", "non_coding_gene_count": "53", "pubmed_id": "33052084" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-19", "dateModified": "2020-03-19", "datePublished": "2020-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter conturbans" ], "sample_taxid": [ "1737472" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.100 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3884131", "Number of Sequences": "88", "Longest Sequences (bp)": "484470", "N50 (bp)": "230861", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.0", "Number of CDSs": "3453", "Average Protein Length": "324.1", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter conturbans", "strain": "strain=LMG 1627", "accession": "GCA_011516755.1", "taxid": 1737472, "species_taxid": 1737472, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1254, "total_fragments": 1255, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter aceti", "strain": "strain=NBRC 14818", "accession": "GCA_000193495.2", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 81.7192, "matched_fragments": 586, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=DSM 3508", "accession": "GCA_004341595.1", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 81.6704, "matched_fragments": 573, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=NBRC 14818", "accession": "GCA_000963905.1", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 81.3614, "matched_fragments": 552, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter estunensis", "strain": "strain=LMG 1626", "accession": "GCA_011516945.1", "taxid": 104097, "species_taxid": 104097, "relation_to_type": "type", "validated": true, "ani": 79.6558, "matched_fragments": 411, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas maltaceti", "strain": "strain=LMG 1529", "accession": "GCA_002906255.1", "taxid": 1203393, "species_taxid": 1203393, "relation_to_type": "type", "validated": true, "ani": 77.7633, "matched_fragments": 218, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas maltaceti", "strain": "strain=LMG 1529", "accession": "GCA_003206475.1", "taxid": 1203393, "species_taxid": 1203393, "relation_to_type": "type", "validated": true, "ani": 77.6995, "matched_fragments": 217, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter malorum", "strain": "strain=LMG 1746", "accession": "GCA_001580615.1", 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"relation_to_type": "type", "validated": true, "ani": 75.745, "matched_fragments": 59, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011516755.1", "gtdb_species": "s__Acetobacter conturbans", "ani": 100.0, "matched_fragments": 1254, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_011516765.1", "gtdb_species": "s__Acetobacter sicerae", "ani": 81.8864, "matched_fragments": 615, "total_fragments": 1255, "gtdb_taxonomy": 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