{ "type": "genome", "identifier": "GCF_011516825.1", "organism": "Acetobacter oeni", "title": "Acetobacter oeni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011516825.1", "bioproject": "PRJNA224116", "biosample": "SAMN13343652", "wgs_master": "WOTA00000000.1", "refseq_category": "reference genome", "taxid": "304077", "species_taxid": "304077", "organism_name": "Acetobacter oeni", "infraspecific_name": "strain=LMG 21952", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/19", "asm_name": "ASM1151682v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_011516825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/516/825/GCF_011516825.1_ASM1151682v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4106074", "genome_size_ungapped": "4106074", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011516825.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3818", "protein_coding_gene_count": "3605", "non_coding_gene_count": "53", "pubmed_id": "33052084" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-19", "dateModified": "2020-03-19", "datePublished": "2020-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter oeni" ], "sample_taxid": [ "304077" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Portugal" ], "sample_host_location_id": [], "data_size": "1.161 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4106074", "Number of Sequences": "111", "Longest Sequences (bp)": "293223", "N50 (bp)": "120458", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "3715", "Average Protein Length": "313.2", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter oeni", "strain": "strain=LMG 21952", "accession": "GCA_011516825.1", "taxid": 304077, "species_taxid": 304077, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1313, "total_fragments": 1320, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter oeni", "strain": "strain=DSM 23926", "accession": "GCA_014196315.1", "taxid": 304077, "species_taxid": 304077, "relation_to_type": "type", "validated": true, "ani": 99.9963, "matched_fragments": 1296, "total_fragments": 1320, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter fallax", "strain": "strain=LMG 1636", "accession": "GCA_011516735.1", "taxid": 1737473, "species_taxid": 1737473, "relation_to_type": "type", "validated": true, "ani": 82.0716, "matched_fragments": 697, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter conturbans", "strain": "strain=LMG 1627", "accession": "GCA_011516755.1", "taxid": 1737472, "species_taxid": 1737472, "relation_to_type": "type", "validated": true, "ani": 80.7688, "matched_fragments": 291, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter potus", "strain": "strain=R-71646", "accession": "GCA_015244705.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 80.2587, "matched_fragments": 152, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter estunensis", "strain": "strain=LMG 1626", "accession": "GCA_011516945.1", "taxid": 104097, "species_taxid": 104097, "relation_to_type": "type", "validated": true, "ani": 80.2484, "matched_fragments": 259, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=DSM 3508", "accession": "GCA_004341595.1", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 79.9924, "matched_fragments": 260, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=NBRC 14818", "accession": "GCA_000193495.2", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 79.8966, "matched_fragments": 262, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter nitrogenifigens", "strain": "strain=NBRC 105050", "accession": "GCA_007991375.1", "taxid": 285268, "species_taxid": 285268, "relation_to_type": "type", "validated": true, "ani": 78.0812, "matched_fragments": 230, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter nitrogenifigens", "strain": "strain=DSM 23921", "accession": "GCA_000429165.1", "taxid": 285268, "species_taxid": 285268, "relation_to_type": "type", "validated": true, "ani": 78.037, "matched_fragments": 233, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 77.4146, "matched_fragments": 111, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter albidus", "strain": "strain=NBRC 3250", "accession": "GCA_002723915.1", "taxid": 318683, "species_taxid": 318683, "relation_to_type": "type", "validated": true, "ani": 77.1121, "matched_fragments": 87, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter frateurii", "strain": "strain=NBRC 3264", "accession": "GCA_002723955.1", "taxid": 38308, "species_taxid": 38308, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0865, "matched_fragments": 67, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011516825.1", "gtdb_species": "s__Acetobacter oeni", "ani": 100.0, "matched_fragments": 1313, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_011516835.1", "gtdb_species": "s__Acetobacter musti", "ani": 82.4818, "matched_fragments": 694, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011516765.1", "gtdb_species": "s__Acetobacter sicerae", "ani": 82.373, "matched_fragments": 312, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011516735.1", "gtdb_species": "s__Acetobacter fallax", "ani": 82.0607, "matched_fragments": 700, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011516755.1", "gtdb_species": "s__Acetobacter conturbans", "ani": 80.7784, "matched_fragments": 291, "total_fragments": 1320, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_019083805.1", "gtdb_species": "s__Acetobacter estunensis_A", "ani": 79.0327, "matched_fragments": 225, "total_fragments": 1320, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002005445.1", "gtdb_species": "s__Acetobacter aceti_B", "ani": 79.0036, "matched_fragments": 258, "total_fragments": 1320, "gtdb_taxonomy": 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