{ "type": "genome", "identifier": "GCF_011516865.1", "organism": "Acetobacter ghanensis", "title": "Acetobacter ghanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011516865.1", "bioproject": "PRJNA224116", "biosample": "SAMN13343650", "wgs_master": "WOTE00000000.1", "refseq_category": "reference genome", "taxid": "431306", "species_taxid": "431306", "organism_name": "Acetobacter ghanensis", "infraspecific_name": "strain=LMG 23848", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/19", "asm_name": "ASM1151686v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_011516865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/516/865/GCF_011516865.1_ASM1151686v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2794032", "genome_size_ungapped": "2794032", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011516865.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2644", "protein_coding_gene_count": "2559", "non_coding_gene_count": "55", "pubmed_id": "33052084" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-19", "dateModified": "2020-03-19", "datePublished": "2020-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter ghanensis" ], "sample_taxid": [ "431306" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Ghana" ], "sample_host_location_id": [], "data_size": "0.790 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2794032", "Number of Sequences": "36", "Longest Sequences (bp)": "740290", "N50 (bp)": "332815", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.9", "Number of CDSs": "2616", "Average Protein Length": "316.6", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter ghanensis", "strain": "strain=LMG 23848", "accession": "GCA_011516865.1", "taxid": 431306, "species_taxid": 431306, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 909, "total_fragments": 911, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter ghanensis", "strain": "strain=LMG 23848T", "accession": "GCA_001499675.1", "taxid": 431306, "species_taxid": 431306, "relation_to_type": "type", "validated": true, "ani": 99.986, "matched_fragments": 910, "total_fragments": 911, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter fabarum", "strain": "strain=LMG 24244", "accession": "GCA_011516925.1", "taxid": 483199, "species_taxid": 483199, "relation_to_type": "type", "validated": true, "ani": 85.6282, "matched_fragments": 687, "total_fragments": 911, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=LMG 1617", "accession": "GCA_011516875.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 85.2312, "matched_fragments": 691, "total_fragments": 911, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=DSM 4491", "accession": "GCA_014207635.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 85.1616, "matched_fragments": 701, "total_fragments": 911, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter cerevisiae", "strain": "strain=LMG 1625", "accession": "GCA_001580535.1", "taxid": 178900, "species_taxid": 178900, "relation_to_type": "type", "validated": true, "ani": 79.1136, "matched_fragments": 355, "total_fragments": 911, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001499675.1", "gtdb_species": "s__Acetobacter ghanensis", "ani": 99.986, "matched_fragments": 910, "total_fragments": 911, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_011516925.1", "gtdb_species": "s__Acetobacter fabarum", "ani": 85.6282, "matched_fragments": 687, "total_fragments": 911, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_011516885.1", "gtdb_species": "s__Acetobacter lambici", "ani": 85.5158, "matched_fragments": 682, "total_fragments": 911, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", 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95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001580535.1", "gtdb_species": "s__Acetobacter cerevisiae", "ani": 79.1145, "matched_fragments": 355, "total_fragments": 911, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_011516935.1", "gtdb_species": "s__Acetobacter farinalis", "ani": 78.5945, "matched_fragments": 311, "total_fragments": 911, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, 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