{ "type": "genome", "identifier": "GCF_011516875.1", "organism": "Acetobacter lovaniensis", "title": "Acetobacter lovaniensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011516875.1", "bioproject": "PRJNA224116", "biosample": "SAMN13343647", "wgs_master": "WOTC00000000.1", "refseq_category": "reference genome", "taxid": "104100", "species_taxid": "104100", "organism_name": "Acetobacter lovaniensis", "infraspecific_name": "strain=LMG 1617", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/19", "asm_name": "ASM1151687v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_011516875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/516/875/GCF_011516875.1_ASM1151687v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3469460", "genome_size_ungapped": "3469460", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011516875.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3390", "protein_coding_gene_count": "3249", "non_coding_gene_count": "57", "pubmed_id": "33052084" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-19", "dateModified": "2020-03-19", "datePublished": "2020-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter lovaniensis" ], "sample_taxid": [ "104100" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.982 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3469460", "Number of Sequences": "71", "Longest Sequences (bp)": "708574", "N50 (bp)": "189100", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.6", "Number of CDSs": "3351", "Average Protein Length": "301.6", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter lovaniensis", "strain": "strain=LMG 1617", "accession": "GCA_011516875.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1122, "total_fragments": 1125, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=DSM 4491", "accession": "GCA_014207635.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 99.9957, "matched_fragments": 1112, "total_fragments": 1125, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter fabarum", "strain": "strain=LMG 24244", "accession": "GCA_011516925.1", "taxid": 483199, "species_taxid": 483199, "relation_to_type": "type", "validated": true, "ani": 93.7412, "matched_fragments": 804, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lambici", "strain": "strain=LMG 27439", "accession": "GCA_011516885.1", "taxid": 1332824, "species_taxid": 1332824, "relation_to_type": "type", "validated": true, "ani": 87.3883, "matched_fragments": 786, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter 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"GCA_000964225.1", "taxid": 146476, "species_taxid": 146476, "relation_to_type": "type", "validated": true, "ani": 84.1033, "matched_fragments": 680, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 79.7714, "matched_fragments": 459, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014207635.1", "gtdb_species": "s__Acetobacter lovaniensis", "ani": 99.9957, "matched_fragments": 1112, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_011516925.1", "gtdb_species": "s__Acetobacter fabarum", "ani": 93.7465, "matched_fragments": 804, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_011516885.1", "gtdb_species": "s__Acetobacter lambici", "ani": 87.3867, "matched_fragments": 786, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000613865.1", "gtdb_species": "s__Acetobacter okinawensis", "ani": 85.6537, "matched_fragments": 701, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.60", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002153655.1", "gtdb_species": "s__Acetobacter okinawensis_A", "ani": 85.613, "matched_fragments": 684, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001499675.1", "gtdb_species": "s__Acetobacter ghanensis", "ani": 85.299, "matched_fragments": 691, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000964225.1", "gtdb_species": "s__Acetobacter syzygii", "ani": 84.0879, "matched_fragments": 681, "total_fragments": 1125, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.22", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.234, "cell_length": 0.249, "doubling_h": null, "growth_tmp": 27.0, "optimum_tmp": 29.785, "optimum_ph": 7.0, "genome_size": 3410623.727, "gc_content": 55.949, "coding_genes": 3181.851, "rRNA16S_genes": 4.233, "tRNA_genes": 57.388, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.875, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.7, "coccus_cell_shape": 0.1, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.2, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acetobacter", "lovaniensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }