{ "type": "genome", "identifier": "GCF_011516885.1", "organism": "Acetobacter lambici", "title": "Acetobacter lambici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011516885.1", "bioproject": "PRJNA224116", "biosample": "SAMN13343651", "wgs_master": "WOTD00000000.1", "refseq_category": "reference genome", "taxid": "1332824", "species_taxid": "1332824", "organism_name": "Acetobacter lambici", "infraspecific_name": "strain=LMG 27439", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/19", "asm_name": "ASM1151688v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_011516885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/516/885/GCF_011516885.1_ASM1151688v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3252368", "genome_size_ungapped": "3252368", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "193", "contig_count": "193", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011516885.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3199", "protein_coding_gene_count": "3009", "non_coding_gene_count": "54", "pubmed_id": "33052084" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-19", "dateModified": "2020-03-19", "datePublished": "2020-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter lambici" ], "sample_taxid": [ "1332824" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "0.923 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3252368", "Number of Sequences": "193", "Longest Sequences (bp)": "434021", "N50 (bp)": "75608", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.2", "Number of CDSs": "3049", "Average Protein Length": "304.1", "Coding Ratio (%)": "85.5", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter lambici", "strain": "strain=LMG 27439", "accession": "GCA_011516885.1", "taxid": 1332824, "species_taxid": 1332824, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 997, "total_fragments": 1000, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter fabarum", "strain": "strain=LMG 24244", "accession": "GCA_011516925.1", "taxid": 483199, "species_taxid": 483199, "relation_to_type": "type", "validated": true, "ani": 87.7571, "matched_fragments": 777, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=DSM 4491", "accession": "GCA_014207635.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 87.3446, "matched_fragments": 799, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=LMG 1617", "accession": "GCA_011516875.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 87.3135, "matched_fragments": 802, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter 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"GCA_007989285.1", "taxid": 146476, "species_taxid": 146476, "relation_to_type": "type", "validated": true, "ani": 84.6869, "matched_fragments": 658, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter syzygii", "strain": "strain=9H-2", "accession": "GCA_000964225.1", "taxid": 146476, "species_taxid": 146476, "relation_to_type": "type", "validated": true, "ani": 84.611, "matched_fragments": 655, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 79.5208, "matched_fragments": 414, "total_fragments": 1000, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011516885.1", 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0.1, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.2, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acetobacter", "lambici" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }