{ "type": "genome", "identifier": "GCF_011516945.1", "organism": "Acetobacter estunensis", "title": "Acetobacter estunensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011516945.1", "bioproject": "PRJNA224116", "biosample": "SAMN13343659", "wgs_master": "WOTH00000000.1", "refseq_category": "reference genome", "taxid": "104097", "species_taxid": "104097", "organism_name": "Acetobacter estunensis", "infraspecific_name": "strain=LMG 1626", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/19", "asm_name": "ASM1151694v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_011516945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/516/945/GCF_011516945.1_ASM1151694v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3447365", "genome_size_ungapped": "3447365", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "120", "contig_count": "120", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011516945.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3329", "protein_coding_gene_count": "3188", "non_coding_gene_count": "51", "pubmed_id": "33052084" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-19", "dateModified": "2020-03-19", "datePublished": "2020-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter estunensis" ], "sample_taxid": [ "104097" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.977 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3447365", "Number of Sequences": "120", "Longest Sequences (bp)": "264370", "N50 (bp)": "75687", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.7", "Number of CDSs": "3210", "Average Protein Length": "312.9", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter estunensis", "strain": "strain=LMG 1626", "accession": "GCA_011516945.1", "taxid": 104097, "species_taxid": 104097, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1087, "total_fragments": 1093, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gluconobacter potus", "strain": "strain=R-71646", "accession": "GCA_015244705.1", "taxid": 2724927, "species_taxid": 2724927, "relation_to_type": "type", "validated": true, "ani": 80.6273, "matched_fragments": 202, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=DSM 3508", "accession": "GCA_004341595.1", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 80.2303, "matched_fragments": 442, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=NBRC 14818", "accession": "GCA_000193495.2", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 80.2044, "matched_fragments": 453, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter conturbans", "strain": "strain=LMG 1627", "accession": "GCA_011516755.1", "taxid": 1737472, "species_taxid": 1737472, "relation_to_type": "type", "validated": true, "ani": 79.6553, "matched_fragments": 414, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=NBRC 14818", "accession": "GCA_000963905.1", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 79.4586, "matched_fragments": 425, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter xylinus", "strain": "strain=NBRC 15237", "accession": "GCA_001571345.1", "taxid": 28448, "species_taxid": 28448, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3584, "matched_fragments": 258, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter melomenusus", "strain": "strain=AV436", "accession": "GCA_013155395.1", "taxid": 2766578, "species_taxid": 2766578, "relation_to_type": "type", "validated": true, "ani": 78.5644, "matched_fragments": 258, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter nataicola", "strain": "strain=LMG 1536", "accession": "GCA_003207795.1", "taxid": 265960, "species_taxid": 265960, "relation_to_type": "type", "validated": true, "ani": 78.5285, "matched_fragments": 250, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 77.9636, "matched_fragments": 158, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=LMG 7603", "accession": "GCA_014174315.1", "taxid": 33996, "species_taxid": 33996, 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"validated": true, "ani": 77.3123, "matched_fragments": 174, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia broomeae", "strain": "strain=ATCC 49717", "accession": "GCA_000314675.2", "taxid": 56946, "species_taxid": 56946, "relation_to_type": "type", "validated": true, "ani": 76.127, "matched_fragments": 51, "total_fragments": 1093, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011516945.1", "gtdb_species": "s__Acetobacter estunensis", "ani": 100.0, "matched_fragments": 1087, "total_fragments": 1093, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_019083805.1", "gtdb_species": "s__Acetobacter estunensis_A", "ani": 94.5531, "matched_fragments": 915, "total_fragments": 1093, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011516765.1", "gtdb_species": "s__Acetobacter sicerae", "ani": 80.4, "matched_fragments": 471, "total_fragments": 1093, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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