{ "type": "genome", "identifier": "GCF_011578045.1", "organism": "Acinetobacter shaoyimingii", "title": "Acinetobacter shaoyimingii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011578045.1", "bioproject": "PRJNA224116", "biosample": "SAMN14278074", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2715164", "species_taxid": "2715164", "organism_name": "Acinetobacter shaoyimingii", "infraspecific_name": "strain=323-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/20", "asm_name": "ASM1157804v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_011578045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/578/045/GCF_011578045.1_ASM1157804v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3571042", "genome_size_ungapped": "3571042", "gc_percent": "38.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011578045.1-RS_2024_11_27", "annotation_date": "2024-11-27", "total_gene_count": "3264", "protein_coding_gene_count": "3117", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-20", "dateModified": "2020-03-20", "datePublished": "2020-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter shaoyimingii" ], "sample_taxid": [ "2715164" ], "sample_host_organism": [ "Equus kiang" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Tibet autonomous region" ], "sample_host_location_id": [], "data_size": "1.004 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3571042", "Number of Sequences": "1", "Longest Sequences (bp)": "3571042", "N50 (bp)": "3571042", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.3", "Number of CDSs": "3188", "Average Protein Length": "314.9", "Coding Ratio (%)": "84.3", "Number of rRNAs": "21", "Number of tRNAs": "79", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter shaoyimingii", "strain": "strain=323-1", "accession": "GCA_011578045.1", "taxid": 2715164, 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457, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 80.254, "matched_fragments": 469, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter equi", "strain": "strain=114", "accession": "GCA_001307195.1", "taxid": 1324350, "species_taxid": 1324350, "relation_to_type": "type", "validated": true, "ani": 80.2452, "matched_fragments": 422, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 80.1862, "matched_fragments": 504, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 80.046, "matched_fragments": 508, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 80.0449, "matched_fragments": 453, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=CIP 107464", "accession": "GCA_000368565.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 80.0434, "matched_fragments": 450, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 80.0117, "matched_fragments": 424, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CCUG 2491", "accession": "GCA_008802215.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 79.9683, "matched_fragments": 490, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=MTCC 9824", "accession": "GCA_000430245.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 79.8128, "matched_fragments": 447, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 79.7338, "matched_fragments": 445, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 79.5215, "matched_fragments": 345, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 78.8062, "matched_fragments": 363, "total_fragments": 1190, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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