{ "type": "genome", "identifier": "GCF_011578285.1", "organism": "Acinetobacter lanii", "title": "Acinetobacter lanii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011578285.1", "bioproject": "PRJNA224116", "biosample": "SAMN14278072", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2715163", "species_taxid": "2715163", "organism_name": "Acinetobacter lanii", "infraspecific_name": "strain=185", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/20", "asm_name": "ASM1157828v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_011578285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/578/285/GCF_011578285.1_ASM1157828v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3428714", "genome_size_ungapped": "3428714", "gc_percent": "41.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011578285.1-RS_2024_11_27", "annotation_date": "2024-11-27", "total_gene_count": "3115", "protein_coding_gene_count": "2930", "non_coding_gene_count": "111", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-20", "dateModified": "2020-03-20", "datePublished": "2020-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter lanii" ], "sample_taxid": [ "2715163" ], "sample_host_organism": [ "Equus kiang" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Tibet autonomous region" ], "sample_host_location_id": [], "data_size": "0.950 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3428714", "Number of Sequences": "2", "Longest Sequences (bp)": "3408300", "N50 (bp)": "3408300", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.3", "Number of CDSs": "3053", "Average Protein Length": "317.6", "Coding Ratio (%)": "84.8", "Number of rRNAs": "24", "Number of tRNAs": "85", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter lanii", "strain": "strain=185", "accession": "GCA_011578285.1", "taxid": 2715163, "species_taxid": 2715163, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1137, "total_fragments": 1142, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter shaoyimingii", "strain": "strain=323-1", "accession": "GCA_011578045.1", "taxid": 2715164, "species_taxid": 2715164, "relation_to_type": "type", "validated": true, "ani": 81.6241, "matched_fragments": 622, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wanghuae", "strain": "strain=dk386", "accession": "GCA_009557235.1", "taxid": 2662362, "species_taxid": 2662362, "relation_to_type": "type", "validated": true, "ani": 80.9948, "matched_fragments": 473, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6491, "matched_fragments": 460, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 80.3722, "matched_fragments": 483, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter portensis", "strain": "strain=AC 877", "accession": "GCA_009372215.1", "taxid": 1839785, "species_taxid": 1839785, "relation_to_type": "type", "validated": true, "ani": 80.3258, "matched_fragments": 402, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 80.3074, "matched_fragments": 501, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrestris", "strain": "strain=ANC 4471", "accession": "GCA_004331155.1", "taxid": 2529843, "species_taxid": 2529843, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3018, "matched_fragments": 507, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 80.2856, "matched_fragments": 503, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.2367, "matched_fragments": 453, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter celticus", "strain": "strain=ANC 4603", "accession": "GCA_001707755.1", "taxid": 1891224, "species_taxid": 1891224, "relation_to_type": "type", "validated": true, "ani": 80.0437, "matched_fragments": 417, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 80.0219, "matched_fragments": 449, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 79.869, "matched_fragments": 468, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 79.8528, "matched_fragments": 383, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 79.8077, "matched_fragments": 460, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 79.7119, "matched_fragments": 344, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CCUG 2491", "accession": "GCA_008802215.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 79.5597, "matched_fragments": 448, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pragensis", "strain": "strain=ANC 4149", "accession": "GCA_001605895.1", "taxid": 1806892, "species_taxid": 1806892, "relation_to_type": "type", "validated": true, "ani": 79.4875, "matched_fragments": 386, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 79.3092, "matched_fragments": 405, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 78.7457, "matched_fragments": 348, "total_fragments": 1142, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011578285.1", "gtdb_species": "s__Acinetobacter lanii", "ani": 100.0, "matched_fragments": 1137, "total_fragments": 1142, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_011578045.1", "gtdb_species": "s__Acinetobacter shaoyimingii", "ani": 81.6123, "matched_fragments": 620, "total_fragments": 1142, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "lanii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }