{ "type": "genome", "identifier": "GCF_011604685.1", "organism": "Spirosoma aureum", "title": "Spirosoma aureum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011604685.1", "bioproject": "PRJNA224116", "biosample": "SAMN14299271", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2692134", "species_taxid": "2692134", "organism_name": "Spirosoma aureum", "infraspecific_name": "strain=BT328", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/22", "asm_name": "ASM1160468v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_011604685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/604/685/GCF_011604685.1_ASM1160468v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8898242", "genome_size_ungapped": "8898242", "gc_percent": "47.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011604685.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "7180", "protein_coding_gene_count": "7070", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-22", "dateModified": "2020-03-22", "datePublished": "2020-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma aureum" ], "sample_taxid": [ "2692134" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Uijeongbu-si" ], "sample_host_location_id": [], "data_size": "2.534 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8898242", "Number of Sequences": "1", "Longest Sequences (bp)": "8898242", "N50 (bp)": "8898242", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.7", "Number of CDSs": "7023", "Average Protein Length": "365.9", "Coding Ratio (%)": "86.6", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2965, "total_fragments": 2966, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 92.8636, "matched_fragments": 2672, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 78.9654, "matched_fragments": 993, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma terrae", "strain": "strain=KCTC 52035", "accession": "GCA_010435915.1", "taxid": 1968276, "species_taxid": 1968276, "relation_to_type": "type", "validated": true, "ani": 77.8312, "matched_fragments": 731, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.7545, "matched_fragments": 709, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 77.7333, "matched_fragments": 489, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma pollinicola", "strain": "strain=Ha7", "accession": "GCA_002831565.1", "taxid": 2057025, "species_taxid": 2057025, "relation_to_type": "type", "validated": true, "ani": 77.707, "matched_fragments": 547, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.4498, "matched_fragments": 532, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 77.3982, "matched_fragments": 564, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 77.2167, "matched_fragments": 490, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma profusum", "strain": "strain=BT702", "accession": "GCA_014699005.1", "taxid": 2771354, "species_taxid": 2771354, "relation_to_type": "type", "validated": true, "ani": 77.1884, "matched_fragments": 527, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 77.1533, "matched_fragments": 359, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 77.1054, "matched_fragments": 358, "total_fragments": 2966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 76.9278, "matched_fragments": 372, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010747415.1", "gtdb_species": "s__Spirosoma agri", "ani": 78.9681, "matched_fragments": 991, "total_fragments": 2966, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010435915.1", "gtdb_species": "s__Spirosoma terrae", "ani": 77.8453, "matched_fragments": 728, "total_fragments": 2966, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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