{ "type": "genome", "identifier": "GCF_011617245.1", "organism": "Brevibacterium atlanticum", "title": "Brevibacterium atlanticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "xiamen university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011617245.1", "bioproject": "PRJNA224116", "biosample": "SAMN13831370", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2697563", "species_taxid": "2697563", "organism_name": "Brevibacterium atlanticum", "infraspecific_name": "strain=WO024", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/23", "asm_name": "ASM1161724v1", "asm_submitter": "xiamen university", "gbrs_paired_asm": "GCA_011617245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/617/245/GCF_011617245.1_ASM1161724v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4156794", "genome_size_ungapped": "4156794", "gc_percent": "65.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011617245.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3708", "protein_coding_gene_count": "3616", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-23", "dateModified": "2020-03-23", "datePublished": "2020-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium atlanticum" ], "sample_taxid": [ "2697563" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean" ], "sample_host_location_id": [], "data_size": "1.136 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4156794", "Number of Sequences": "1", "Longest Sequences (bp)": "4156794", "N50 (bp)": "4156794", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "3676", "Average Protein Length": "337.3", "Coding Ratio (%)": "89.5", "Number of rRNAs": "12", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium atlanticum", "strain": "strain=WO024", "accession": "GCA_011617245.1", "taxid": 2697563, "species_taxid": 2697563, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1384, "total_fragments": 1385, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevibacterium oceani", "strain": "strain=BBH7", "accession": "GCA_013623835.1", "taxid": 358099, "species_taxid": 358099, "relation_to_type": "type", "validated": true, "ani": 91.6254, "matched_fragments": 1148, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium sediminis", "strain": "strain=FXJ8.269", "accession": "GCA_013623905.1", "taxid": 1857024, "species_taxid": 1857024, "relation_to_type": "type", "validated": true, "ani": 85.3176, "matched_fragments": 1057, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium pigmentatum", "strain": "strain=YB235", "accession": "GCA_011617465.1", "taxid": 1496080, "species_taxid": 1496080, "relation_to_type": "type", "validated": true, "ani": 85.3162, "matched_fragments": 1011, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium permense", "strain": "strain=VKM Ac-2280", "accession": "GCA_013280495.1", "taxid": 234834, "species_taxid": 234834, "relation_to_type": "type", "validated": true, "ani": 85.2913, "matched_fragments": 936, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium linens", "strain": "strain=ATCC 9172", "accession": "GCA_900169165.1", "taxid": 1703, "species_taxid": 1703, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2871, "matched_fragments": 945, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium limosum", "strain": "strain=o2", "accession": "GCA_011617705.1", "taxid": 2697565, "species_taxid": 2697565, "relation_to_type": "type", "validated": true, "ani": 85.2388, "matched_fragments": 999, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium sediminis", "strain": "strain=CGMCC 1.15472", "accession": "GCA_014643055.1", "taxid": 1857024, "species_taxid": 1857024, "relation_to_type": "type", "validated": true, "ani": 85.2343, "matched_fragments": 1068, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium linens", "strain": "strain=ATCC 9172", "accession": "GCA_008868375.1", "taxid": 1703, "species_taxid": 1703, "relation_to_type": "suspected-type", "validated": true, "ani": 85.1734, "matched_fragments": 942, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium epidermidis", "strain": "strain=NBRC 14811", "accession": "GCA_001570805.1", "taxid": 1698, "species_taxid": 1698, "relation_to_type": "type", "validated": true, "ani": 84.9921, "matched_fragments": 980, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium renqingii", "strain": "strain=REN4", "accession": "GCA_017808105.1", "taxid": 2776916, "species_taxid": 2776916, "relation_to_type": "type", "validated": true, "ani": 84.9574, "matched_fragments": 906, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium antiquum", "strain": "strain=DSM 21545", "accession": "GCA_016107655.1", "taxid": 234835, "species_taxid": 234835, "relation_to_type": "type", "validated": true, "ani": 81.1756, "matched_fragments": 809, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium zhoupengii", "strain": "strain=HY170", "accession": "GCA_021117425.1", "taxid": 2898795, "species_taxid": 2898795, "relation_to_type": "type", "validated": true, "ani": 81.094, "matched_fragments": 864, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium gallinarum", "strain": "strain=Re57", "accession": "GCA_014836885.1", "taxid": 2762220, "species_taxid": 2762220, "relation_to_type": "type", "validated": true, "ani": 78.9069, "matched_fragments": 410, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium daeguense", "strain": "strain=DSM 27938", "accession": "GCA_021729135.1", "taxid": 909936, "species_taxid": 909936, "relation_to_type": "type", "validated": true, "ani": 78.2513, "matched_fragments": 339, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 76.5311, "matched_fragments": 165, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011617245.1", "gtdb_species": "s__Brevibacterium sp011617245", "ani": 100.0, "matched_fragments": 1384, "total_fragments": 1385, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013623835.1", "gtdb_species": "s__Brevibacterium oceani", "ani": 91.6254, "matched_fragments": 1148, "total_fragments": 1385, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.48", "min_intra_species_ani": "96.48", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004745485.1", "gtdb_species": "s__Brevibacterium sp004745485", "ani": 85.9702, 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