{ "type": "genome", "identifier": "GCF_011617465.1", "organism": "Brevibacterium pigmentatum", "title": "Brevibacterium pigmentatum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "xiamen university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011617465.1", "bioproject": "PRJNA224116", "biosample": "SAMN13831374", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1496080", "species_taxid": "1496080", "organism_name": "Brevibacterium pigmentatum", "infraspecific_name": "strain=YB235", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/23", "asm_name": "ASM1161746v1", "asm_submitter": "xiamen university", "gbrs_paired_asm": "GCA_011617465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/617/465/GCF_011617465.1_ASM1161746v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3913130", "genome_size_ungapped": "3913130", "gc_percent": "64.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011617465.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3567", "protein_coding_gene_count": "3466", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-23", "dateModified": "2020-03-23", "datePublished": "2020-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium pigmentatum" ], "sample_taxid": [ "1496080" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean" ], 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"status": "conclusive" }, { "organism_name": "Brevibacterium epidermidis", "strain": "strain=NBRC 14811", "accession": "GCA_001570805.1", "taxid": 1698, "species_taxid": 1698, "relation_to_type": "type", "validated": true, "ani": 92.8842, "matched_fragments": 1085, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium iodinum", "strain": "strain=ATCC 49514", "accession": "GCA_900169265.1", "taxid": 31943, "species_taxid": 31943, "relation_to_type": "type", "validated": true, "ani": 91.7282, "matched_fragments": 998, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium sediminis", "strain": "strain=FXJ8.269", "accession": "GCA_013623905.1", "taxid": 1857024, "species_taxid": 1857024, "relation_to_type": "type", "validated": true, "ani": 91.6803, "matched_fragments": 1106, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium sediminis", "strain": "strain=CGMCC 1.15472", "accession": "GCA_014643055.1", "taxid": 1857024, "species_taxid": 1857024, "relation_to_type": "type", "validated": true, "ani": 91.6759, "matched_fragments": 1114, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium permense", "strain": "strain=VKM Ac-2280", "accession": "GCA_013280495.1", "taxid": 234834, "species_taxid": 234834, "relation_to_type": "type", "validated": true, "ani": 91.5642, "matched_fragments": 1076, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium linens", "strain": "strain=ATCC 9172", "accession": "GCA_900169165.1", "taxid": 1703, "species_taxid": 1703, "relation_to_type": "suspected-type", "validated": true, "ani": 91.2868, "matched_fragments": 1049, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium linens", "strain": "strain=ATCC 9172", "accession": "GCA_008868375.1", "taxid": 1703, "species_taxid": 1703, "relation_to_type": "suspected-type", "validated": true, "ani": 91.2597, "matched_fragments": 1034, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium siliguriense", "strain": "strain=DSM 23676", "accession": "GCA_900105315.1", "taxid": 1136497, "species_taxid": 1136497, "relation_to_type": "type", "validated": true, "ani": 90.8563, "matched_fragments": 1090, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium limosum", "strain": "strain=o2", "accession": "GCA_011617705.1", "taxid": 2697565, "species_taxid": 2697565, "relation_to_type": "type", "validated": true, "ani": 90.0259, "matched_fragments": 1145, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium zhoupengii", "strain": "strain=HY170", "accession": 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