{ "type": "genome", "identifier": "GCF_011683915.1", "organism": "Pelagibius litoralis", "title": "Pelagibius litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011683915.1", "bioproject": "PRJNA224116", "biosample": "SAMN14390003", "wgs_master": "JAAQPH000000000.1", "refseq_category": "reference genome", "taxid": "374515", "species_taxid": "374515", "organism_name": "Pelagibius litoralis", "infraspecific_name": "strain=DSM 21314", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/23", "asm_name": "ASM1168391v1", "asm_submitter": "Guangxi University", "gbrs_paired_asm": "GCA_011683915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/683/915/GCF_011683915.1_ASM1168391v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6028128", "genome_size_ungapped": "6028128", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011683915.1-RS_2024_07_21", "annotation_date": "2024-07-21", "total_gene_count": "5738", "protein_coding_gene_count": "5614", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-23", "dateModified": "2020-03-23", "datePublished": "2020-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Pelagibius litoralis" ], "sample_taxid": [ "374515" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.686 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6028128", "Number of Sequences": "64", "Longest Sequences (bp)": "440563", "N50 (bp)": "229969", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "5667", "Average Protein Length": "309.3", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelagibius litoralis", "strain": "strain=DSM 21314", "accession": "GCA_011683915.1", "taxid": 374515, "species_taxid": 374515, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1977, "total_fragments": 1978, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 80.4863, "matched_fragments": 863, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 77.3506, "matched_fragments": 471, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 77.28, "matched_fragments": 465, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Denitrobaculum tricleocarpae", "strain": "strain=R148", "accession": "GCA_007004665.1", "taxid": 2591009, "species_taxid": 2591009, "relation_to_type": "type", "validated": true, "ani": 76.9883, "matched_fragments": 282, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 76.9166, "matched_fragments": 245, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fodinicurvata fenggangensis", "strain": "strain=DSM 21160", "accession": "GCA_000686045.1", "taxid": 1121830, "species_taxid": 1121830, "relation_to_type": "type", "validated": true, "ani": 76.9165, "matched_fragments": 177, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fodinicurvata sediminis", "strain": "strain=DSM 21159", "accession": "GCA_000420625.1", "taxid": 1121832, "species_taxid": 1121832, "relation_to_type": "type", "validated": true, "ani": 76.9117, "matched_fragments": 160, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovibrio salinarum", "strain": "strain=DSM 9154", "accession": "GCA_000515255.1", "taxid": 1087, "species_taxid": 1087, "relation_to_type": "type", "validated": true, "ani": 76.9063, "matched_fragments": 214, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 76.7852, "matched_fragments": 219, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 76.6994, "matched_fragments": 332, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 76.5954, "matched_fragments": 274, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 76.53, "matched_fragments": 363, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oleiclasticum", "strain": "strain=RWY-5-1-1", "accession": "GCA_013423485.1", "taxid": 2735135, "species_taxid": 2735135, "relation_to_type": "type", "validated": true, "ani": 76.4915, "matched_fragments": 303, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira goensis", "strain": "strain=JA135", "accession": "GCA_014197795.1", "taxid": 391922, "species_taxid": 391922, "relation_to_type": "type", "validated": true, "ani": 76.478, "matched_fragments": 228, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella fusca", "strain": "strain=DSM 21319", "accession": "GCA_014203155.1", "taxid": 544480, "species_taxid": 544480, "relation_to_type": "type", "validated": true, "ani": 76.3955, "matched_fragments": 181, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovibrio sulfidiphilus", "strain": "strain=DSM 23193", "accession": "GCA_014861485.1", "taxid": 1220600, "species_taxid": 1220600, "relation_to_type": "type", "validated": true, "ani": 76.3587, "matched_fragments": 71, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidicaulis marinus", "strain": "strain=MA2", "accession": "GCA_000739695.1", "taxid": 1333998, "species_taxid": 1333998, "relation_to_type": "type", "validated": true, "ani": 76.2551, "matched_fragments": 85, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodospirillum rubrum", "strain": "strain=DSM 467", "accession": "GCA_019134555.1", "taxid": 1085, "species_taxid": 1085, "relation_to_type": "type", "validated": true, "ani": 76.2476, "matched_fragments": 172, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 76.2127, "matched_fragments": 183, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium septentrionale", "strain": "strain=1S1", "accession": "GCA_011516645.4", "taxid": 1404411, "species_taxid": 1404411, "relation_to_type": "type", "validated": true, "ani": 76.1273, "matched_fragments": 176, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum griseum", "strain": "strain=L-25-5 w-1", "accession": "GCA_003966125.1", "taxid": 2496639, "species_taxid": 2496639, "relation_to_type": "type", "validated": true, "ani": 76.097, "matched_fragments": 216, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coraliihabitans acroporae", "strain": "strain=NNCM2", "accession": "GCA_019891535.1", "taxid": 2834412, "species_taxid": 2834412, "relation_to_type": "type", "validated": true, "ani": 76.0056, "matched_fragments": 135, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas pondensis", "strain": "strain=LVF1", "accession": "GCA_017487345.1", "taxid": 2774189, "species_taxid": 2774189, "relation_to_type": "type", "validated": true, "ani": 75.9918, "matched_fragments": 114, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium glycinis", "strain": "strain=CNPSo 4016", "accession": "GCA_016031655.1", "taxid": 2751812, "species_taxid": 2751812, "relation_to_type": "type", "validated": true, "ani": 75.8134, "matched_fragments": 177, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudogemmobacter hezensis", "strain": "strain=D13-10-4-6", "accession": "GCA_013155295.1", "taxid": 2737662, "species_taxid": 2737662, "relation_to_type": "type", "validated": true, "ani": 75.421, "matched_fragments": 67, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter edaphi", "strain": "strain=NL", "accession": "GCA_003258365.1", "taxid": 2211146, 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litoralis", "ani": 100.0, "matched_fragments": 1977, "total_fragments": 1978, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Kiloniellaceae;g__Pelagibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_001657395.1", "gtdb_species": "s__Pelagibius sp001657395", "ani": 81.2577, "matched_fragments": 1062, "total_fragments": 1978, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Kiloniellaceae;g__Pelagibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014925385.1", "gtdb_species": "s__WHTV01 sp014925385", "ani": 80.482, 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