{
    "type": "genome",
    "identifier": "GCF_011684115.1",
    "organism": "Rahnella aceris",
    "title": "Rahnella aceris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "BioPS Co., Ltd.",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011684115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13910010",
        "wgs_master": "JAADJV000000000.1",
        "refseq_category": "na",
        "taxid": "2703885",
        "species_taxid": "2703885",
        "organism_name": "Rahnella aceris",
        "infraspecific_name": "strain=SAP-19",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/23",
        "asm_name": "ASM1168411v1",
        "asm_submitter": "BioPS Co., Ltd.",
        "gbrs_paired_asm": "GCA_011684115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/684/115/GCF_011684115.1_ASM1168411v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5233450",
        "genome_size_ungapped": "5233156",
        "gc_percent": "52.500000",
        "replicon_count": "0",
        "scaffold_count": "10",
        "contig_count": "10",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011684115.1-RS_2024_11_18",
        "annotation_date": "2024-11-18",
        "total_gene_count": "4795",
        "protein_coding_gene_count": "4659",
        "non_coding_gene_count": "85",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-23",
    "dateModified": "2020-03-23",
    "datePublished": "2020-03-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rahnella aceris"
        ],
        "sample_taxid": [
            "2703885"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Jeju"
        ],
        "sample_host_location_id": [],
        "data_size": "1.481 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5233450",
        "Number of Sequences": "10",
        "Longest Sequences (bp)": "2723630",
        "N50 (bp)": "2723630",
        "Gap Ratio (%)": "0.005618",
        "GCcontent (%)": "52.3",
        "Number of CDSs": "4731",
        "Average Protein Length": "323.4",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "69",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rahnella aceris",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1738,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "taxid": 34038,
                "species_taxid": 34038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 92.7586,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella aquatilis",
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                "species_taxid": 34038,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella perminowiae",
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                "accession": "GCA_019049755.1",
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                "species_taxid": 2816244,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella victoriana",
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                "accession": "GCA_004330295.1",
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                "relation_to_type": "type",
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                "matched_fragments": 1453,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella variigena",
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                "accession": "GCA_003610915.1",
                "taxid": 574964,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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                "status": "below_threshold"
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            {
                "organism_name": "Rahnella bonaserana",
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                "species_taxid": 2816248,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella ecdela",
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                "accession": "GCA_019049625.1",
                "taxid": 2816250,
                "species_taxid": 2816250,
                "relation_to_type": "type",
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                "ani": 88.0992,
                "matched_fragments": 1359,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella bruchi",
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                "accession": "GCA_003614975.1",
                "taxid": 1510573,
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                "relation_to_type": "type",
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                "ani": 87.9372,
                "matched_fragments": 1355,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella rivi",
                "strain": "strain=FC061912-K",
                "accession": "GCA_019049655.1",
                "taxid": 2816249,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1451,
                "matched_fragments": 1310,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1024,
                "matched_fragments": 581,
                "total_fragments": 1740,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_011684115.1",
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                "total_fragments": 1740,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella",
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                "total_fragments": 1740,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}