{
    "type": "genome",
    "identifier": "GCF_011694815.1",
    "organism": "Streptomyces liangshanensis",
    "title": "Streptomyces liangshanensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Hunan university of science and technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_011694815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14378433",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2717324",
        "species_taxid": "2717324",
        "organism_name": "Streptomyces liangshanensis",
        "infraspecific_name": "strain=QMT-12",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/24",
        "asm_name": "ASM1169481v1",
        "asm_submitter": "Hunan university of science and technology",
        "gbrs_paired_asm": "GCA_011694815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/694/815/GCF_011694815.1_ASM1169481v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7716784",
        "genome_size_ungapped": "7716784",
        "gc_percent": "72.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_011694815.1-RS_2024_04_19",
        "annotation_date": "2024-04-19",
        "total_gene_count": "6726",
        "protein_coding_gene_count": "6538",
        "non_coding_gene_count": "90",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-24",
    "dateModified": "2020-03-24",
    "datePublished": "2020-03-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces liangshanensis"
        ],
        "sample_taxid": [
            "2717324"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Xichang City,Sichuan province"
        ],
        "sample_host_location_id": [],
        "data_size": "2.060 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7716784",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "7716784",
        "N50 (bp)": "7716784",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.1",
        "Number of CDSs": "6759",
        "Average Protein Length": "338.2",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "18",
        "Number of tRNAs": "86",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces liangshanensis",
                "strain": "strain=QMT-12",
                "accession": "GCA_011694815.1",
                "taxid": 2717324,
                "species_taxid": 2717324,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2572,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces scopuliridis",
                "strain": "strain=NRRL B-24574",
                "accession": "GCA_000718095.1",
                "taxid": 452529,
                "species_taxid": 452529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6397,
                "matched_fragments": 1579,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces scopuliridis",
                "strain": "strain=RB72",
                "accession": "GCA_003073355.1",
                "taxid": 452529,
                "species_taxid": 452529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6017,
                "matched_fragments": 1472,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lushanensis",
                "strain": "strain=NRRL B-24994",
                "accession": "GCA_001700515.1",
                "taxid": 1434255,
                "species_taxid": 1434255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2423,
                "matched_fragments": 1344,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces odonnellii",
                "strain": "strain=NRRL B-24891",
                "accession": "GCA_000981895.1",
                "taxid": 1417980,
                "species_taxid": 1417980,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1961,
                "matched_fragments": 1410,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces corynorhini",
                "strain": "strain=AC230",
                "accession": "GCA_003346515.1",
                "taxid": 2282652,
                "species_taxid": 2282652,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9518,
                "matched_fragments": 1335,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces paludis",
                "strain": "strain=GSSD-12",
                "accession": "GCA_003344965.1",
                "taxid": 2282738,
                "species_taxid": 2282738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7943,
                "matched_fragments": 1471,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces albidochromogenes",
                "strain": "strain=DSM 41800",
                "accession": "GCA_005981925.1",
                "taxid": 329524,
                "species_taxid": 329524,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8101,
                "matched_fragments": 1169,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces fuscigenes",
                "strain": "strain=JBL-20",
                "accession": "GCA_021556455.1",
                "taxid": 1528880,
                "species_taxid": 1528880,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0243,
                "matched_fragments": 986,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces somaliensis",
                "strain": "strain=DSM 40738",
                "accession": "GCA_024349285.1",
                "taxid": 78355,
                "species_taxid": 78355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8651,
                "matched_fragments": 1006,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sudanensis",
                "strain": "strain=SD 504",
                "accession": "GCA_023614315.1",
                "taxid": 436397,
                "species_taxid": 436397,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7746,
                "matched_fragments": 1010,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lichenis",
                "strain": "strain=LCR6-01",
                "accession": "GCA_023218175.1",
                "taxid": 2306967,
                "species_taxid": 2306967,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5786,
                "matched_fragments": 1278,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces roseirectus",
                "strain": "strain=CRXT-G-22",
                "accession": "GCA_014489635.1",
                "taxid": 2768066,
                "species_taxid": 2768066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4203,
                "matched_fragments": 1305,
                "total_fragments": 2572,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_011694815.1",
                "gtdb_species": "s__Streptomyces liangshanensis",
                "ani": 100.0,
                "matched_fragments": 2572,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000718095.1",
                "gtdb_species": "s__Streptomyces scopuliridis",
                "ani": 84.6274,
                "matched_fragments": 1582,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004151105.1",
                "gtdb_species": "s__Streptomyces sp004151105",
                "ani": 84.4271,
                "matched_fragments": 1613,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001700515.1",
                "gtdb_species": "s__Streptomyces lushanensis",
                "ani": 84.2691,
                "matched_fragments": 1341,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000981895.1",
                "gtdb_species": "s__Streptomyces odonnellii",
                "ani": 84.1967,
                "matched_fragments": 1409,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.86",
                "min_intra_species_ani": "95.86",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003346515.1",
                "gtdb_species": "s__Streptomyces corynorhini",
                "ani": 83.9713,
                "matched_fragments": 1333,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003344965.1",
                "gtdb_species": "s__Streptomyces paludis",
                "ani": 83.7624,
                "matched_fragments": 1474,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000818175.1",
                "gtdb_species": "s__Streptomyces sp000818175",
                "ani": 83.6151,
                "matched_fragments": 1594,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000818195.1",
                "gtdb_species": "s__Streptomyces sp000818195",
                "ani": 83.5852,
                "matched_fragments": 1648,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002009175.1",
                "gtdb_species": "s__Streptomyces niveus_A",
                "ani": 83.2033,
                "matched_fragments": 1470,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010384365.1",
                "gtdb_species": "s__Streptomyces sp010384365",
                "ani": 83.1034,
                "matched_fragments": 1456,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900091955.1",
                "gtdb_species": "s__Streptomyces sp900091955",
                "ani": 81.9686,
                "matched_fragments": 1315,
                "total_fragments": 2572,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.757,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8292419.302,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 0.998,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "liangshanensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}