{ "type": "genome", "identifier": "GCF_011742875.1", "organism": "Luteibacter yeojuensis", "title": "Luteibacter yeojuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, Ministry of Natural Resources.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_011742875.1", "bioproject": "PRJNA224116", "biosample": "SAMN14402306", "wgs_master": "JAAQTL000000000.1", "refseq_category": "reference genome", "taxid": "345309", "species_taxid": "345309", "organism_name": "Luteibacter yeojuensis", "infraspecific_name": "strain=DSM 17673", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/24", "asm_name": "ASM1174287v1", "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources.", "gbrs_paired_asm": "GCA_011742875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/011/742/875/GCF_011742875.1_ASM1174287v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4221433", "genome_size_ungapped": "4221433", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_011742875.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3818", "protein_coding_gene_count": "3735", "non_coding_gene_count": "56", "pubmed_id": "16957102" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-24", "dateModified": "2020-03-24", "datePublished": "2020-03-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteibacter yeojuensis" ], "sample_taxid": [ "345309" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.157 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4221433", "Number of Sequences": "6", "Longest Sequences (bp)": "3294866", "N50 (bp)": "3294866", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "3794", "Average Protein Length": "340.6", "Coding Ratio (%)": "91.8", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteibacter yeojuensis", "strain": "strain=DSM 17673", "accession": "GCA_011742875.1", "taxid": 345309, "species_taxid": 345309, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1405, "total_fragments": 1405, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Luteibacter jiangsuensis", "strain": "strain=CGMCC 1.10133", "accession": "GCA_011742555.1", "taxid": 637577, "species_taxid": 637577, "relation_to_type": "type", "validated": true, "ani": 85.1878, "matched_fragments": 1039, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter anthropi", "strain": "strain=CCUG 25036", "accession": "GCA_011759365.1", "taxid": 564369, "species_taxid": 564369, "relation_to_type": "type", "validated": true, "ani": 82.5811, "matched_fragments": 829, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter pinisoli", "strain": "strain=MAH-14", "accession": "GCA_006385595.1", "taxid": 2589080, "species_taxid": 2589080, "relation_to_type": "type", "validated": true, "ani": 82.4505, "matched_fragments": 910, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter rhizovicinus", "strain": "strain=LJ96", "accession": "GCA_001887595.1", "taxid": 242606, "species_taxid": 242606, "relation_to_type": "type", "validated": true, "ani": 82.4146, "matched_fragments": 892, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter rhizovicinus", "strain": "strain=DSM 16549", "accession": "GCA_001010405.1", "taxid": 242606, "species_taxid": 242606, "relation_to_type": "type", "validated": true, "ani": 82.2863, "matched_fragments": 784, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 79.7488, "matched_fragments": 523, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella kyungheensis", "strain": "strain=THG-B117", "accession": "GCA_016905005.1", "taxid": 1242174, "species_taxid": 1242174, "relation_to_type": "type", "validated": true, "ani": 79.7311, "matched_fragments": 576, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella telluris", "strain": "strain=G9", "accession": "GCA_014297575.1", "taxid": 2763498, "species_taxid": 2763498, "relation_to_type": "type", "validated": true, "ani": 79.6864, "matched_fragments": 558, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella japonica", "strain": "strain=DSM 16301", "accession": "GCA_001010355.1", "taxid": 231455, "species_taxid": 231455, "relation_to_type": "type", "validated": true, "ani": 79.4619, "matched_fragments": 448, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella acidiphila", "strain": "strain=7MK23", "accession": "GCA_014863405.1", "taxid": 2775866, "species_taxid": 2775866, "relation_to_type": "type", "validated": true, "ani": 78.9235, "matched_fragments": 514, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter caeni", "strain": "strain=BUT-6", "accession": "GCA_024609805.1", "taxid": 1453545, "species_taxid": 1453545, "relation_to_type": "type", "validated": true, "ani": 78.3446, "matched_fragments": 362, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 76.6355, "matched_fragments": 120, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 76.5887, "matched_fragments": 120, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum indicum", "strain": "strain=P24", "accession": "GCA_000299935.1", "taxid": 526216, "species_taxid": 526216, "relation_to_type": "type", "validated": true, "ani": 75.5242, "matched_fragments": 83, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter dioxanivorans", "strain": "strain=YN2", "accession": "GCA_016807805.1", "taxid": 2528964, "species_taxid": 2528964, "relation_to_type": "type", "validated": true, "ani": 75.2987, "matched_fragments": 131, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycisphaera mikurensis", "strain": "strain=DSM 103959", "accession": "GCA_014207395.1", "taxid": 547188, "species_taxid": 547188, "relation_to_type": "type", "validated": true, "ani": 74.8997, "matched_fragments": 75, "total_fragments": 1405, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011742875.1", "gtdb_species": "s__Luteibacter yeojuensis", "ani": 100.0, "matched_fragments": 1405, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_011742555.1", "gtdb_species": "s__Luteibacter jiangsuensis", "ani": 85.2076, "matched_fragments": 1036, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011759605.1", "gtdb_species": "s__Luteibacter sp011759605", "ani": 85.1407, "matched_fragments": 1030, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110505.1", "gtdb_species": "s__Luteibacter sp900110505", "ani": 84.2672, "matched_fragments": 931, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.58", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900109915.1", "gtdb_species": "s__Luteibacter sp900109915", "ani": 83.8241, "matched_fragments": 916, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900119235.1", "gtdb_species": "s__Luteibacter sp900119235", "ani": 83.5776, "matched_fragments": 900, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009912395.1", "gtdb_species": "s__Luteibacter sp009912395", "ani": 83.0222, "matched_fragments": 878, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000745005.1", "gtdb_species": "s__Luteibacter sp000745005", "ani": 82.6701, "matched_fragments": 851, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018889975.1", "gtdb_species": "s__Luteibacter sp018889975", "ani": 82.6213, "matched_fragments": 892, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011759365.1", "gtdb_species": "s__Luteibacter anthropi", "ani": 82.5549, "matched_fragments": 832, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Luteibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016868105.1", "gtdb_species": "s__RBG-16-66-20 sp016868105", "ani": 76.3348, "matched_fragments": 104, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__SG8-39;g__RBG-16-66-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903898725.1", "gtdb_species": "s__UBA4615 sp903898725", "ani": 75.5741, "matched_fragments": 155, "total_fragments": 1405, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__UBA4615", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": 0.477, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 22.75, "optimum_ph": 7.25, "genome_size": 4548902.0, "gc_content": 64.7, "coding_genes": 4258.667, "rRNA16S_genes": 2.0, "tRNA_genes": 51.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Luteibacter", "yeojuensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }